Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RKE30_RS06270 Genome accession   NZ_CP134875
Coordinates   1412758..1413804 (+) Length   348 a.a.
NCBI ID   WP_313743243.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407758..1418804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS06255 (RKE30_06255) - 1408984..1410636 (+) 1653 WP_313743240.1 ABC transporter substrate-binding protein -
  RKE30_RS06260 (RKE30_06260) - 1410823..1411749 (+) 927 WP_313743241.1 ABC transporter permease -
  RKE30_RS06265 (RKE30_06265) - 1411783..1412706 (+) 924 WP_313743242.1 ABC transporter permease -
  RKE30_RS06270 (RKE30_06270) amiE 1412758..1413804 (+) 1047 WP_313743243.1 ABC transporter ATP-binding protein Regulator
  RKE30_RS06275 (RKE30_06275) - 1413797..1414957 (+) 1161 WP_313743244.1 dipeptide ABC transporter ATP-binding protein -
  RKE30_RS06280 (RKE30_06280) - 1415024..1416292 (-) 1269 WP_313743245.1 MFS transporter -
  RKE30_RS06285 (RKE30_06285) - 1416380..1416772 (+) 393 WP_313743246.1 VOC family protein -
  RKE30_RS06290 (RKE30_06290) - 1416952..1418574 (+) 1623 WP_313743247.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37847.65 Da        Isoelectric Point: 6.4141

>NTDB_id=808208 RKE30_RS06270 WP_313743243.1 1412758..1413804(+) (amiE) [Streptomyces sp. Li-HN-5-11]
MTSLEMAPSNAGADGNAPLLEVRDLHVEFQVRDSVTKAVNGVNYSVSAGETLAVLGESGSGKSVTAQAIMGILDSPPGRI
AKGEIFFQGQDILRLPESERRKLRGAKMAMIFQDALSSLNPVLSVGFQLGEMFRAHQGLSRKDAKAKAIELMDRVRIPAA
RERVGDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVADVADK
IAVMYAGRIVETAPVHELYKRPAHPYTKGLLDSIPRLDHKGQELYAIKGLPPNLQAIPPGCAFNPRCNMAQDICRTDVPP
LVPVTERDGTELPGRGSACHFWKETIHG

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=808208 RKE30_RS06270 WP_313743243.1 1412758..1413804(+) (amiE) [Streptomyces sp. Li-HN-5-11]
ATGACCAGCCTGGAGATGGCCCCCAGCAACGCCGGGGCGGACGGGAACGCCCCGCTCCTGGAAGTCCGCGACCTGCACGT
GGAGTTCCAGGTCCGTGACTCCGTGACCAAGGCGGTCAACGGCGTCAACTACAGCGTCAGCGCGGGCGAGACGCTCGCCG
TGCTCGGCGAGTCGGGCTCCGGCAAGTCCGTCACCGCGCAGGCGATCATGGGCATCCTGGACAGCCCGCCCGGACGGATC
GCCAAGGGCGAGATCTTCTTCCAGGGCCAGGACATCCTGCGCCTGCCGGAGAGCGAGCGGCGCAAGCTGCGCGGCGCCAA
GATGGCGATGATCTTCCAGGACGCCCTGTCCTCGCTCAACCCGGTGCTGTCCGTGGGCTTCCAGCTCGGCGAGATGTTCC
GCGCGCATCAGGGCCTGTCCCGCAAGGACGCCAAGGCCAAGGCCATCGAGCTGATGGACCGCGTGCGCATCCCGGCCGCC
AGGGAGCGCGTCGGCGACTACCCGCACCAGTTCTCGGGCGGTATGCGCCAGCGCATCATGATCGCCATGGCGCTGGCCCT
GGAGCCGGACCTGATCATCGCCGACGAGCCGACCACGGCCCTCGACGTGACCGTCCAGGCCCAGGTCATGGACCTCCTCG
CGGAGTTGCAGCGCGAGTACAACATGGGCCTGATCCTGATCACCCACGACCTGGGTGTGGTCGCGGACGTCGCCGACAAG
ATCGCGGTGATGTACGCCGGCCGGATCGTCGAGACGGCCCCGGTGCACGAGCTGTACAAGCGTCCCGCCCACCCCTACAC
CAAGGGTCTGCTGGACTCGATCCCGCGCCTGGACCACAAGGGCCAAGAGCTGTACGCGATCAAGGGCCTCCCGCCCAACC
TGCAGGCGATCCCGCCGGGCTGCGCGTTCAACCCGCGCTGCAACATGGCCCAGGACATCTGCCGCACCGACGTACCGCCT
CTGGTGCCGGTGACCGAGCGCGATGGCACGGAACTGCCCGGCCGCGGTTCCGCATGCCACTTCTGGAAGGAGACGATCCA
TGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(40-198)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(250-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50.162

88.793

0.445
  amiE Streptococcus thermophilus LMG 18311

49.191

88.793

0.437
  amiE Streptococcus thermophilus LMD-9

49.191

88.793

0.437
  oppD Streptococcus mutans UA159

46.104

88.506

0.408