Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   P0M29_RS11725 Genome accession   NZ_CP120711
Coordinates   2282247..2283359 (-) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain 12Y     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2277247..2288359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M29_RS11710 (P0M29_11710) gyrA 2277336..2279795 (-) 2460 WP_014416706.1 DNA gyrase subunit A -
  P0M29_RS11715 (P0M29_11715) gyrB 2280011..2281927 (-) 1917 WP_014720600.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  P0M29_RS11720 (P0M29_11720) - 2281984..2282229 (-) 246 WP_004392908.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  P0M29_RS11725 (P0M29_11725) recF 2282247..2283359 (-) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  P0M29_RS11730 (P0M29_11730) rlbA 2283375..2283590 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  P0M29_RS11735 (P0M29_11735) dnaN 2283725..2284861 (-) 1137 WP_029973052.1 DNA polymerase III subunit beta -
  P0M29_RS11740 (P0M29_11740) dnaA 2285046..2286386 (-) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  P0M29_RS11745 (P0M29_11745) rpmH 2287009..2287143 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  P0M29_RS11750 (P0M29_11750) rnpA 2287297..2287647 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=808183 P0M29_RS11725 WP_007409910.1 2282247..2283359(-) (recF) [Bacillus velezensis strain 12Y]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=808183 P0M29_RS11725 WP_007409910.1 2282247..2283359(-) (recF) [Bacillus velezensis strain 12Y]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943