Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P0M29_RS11495 Genome accession   NZ_CP120711
Coordinates   2240551..2240841 (+) Length   96 a.a.
NCBI ID   WP_202622640.1    Uniprot ID   -
Organism   Bacillus velezensis strain 12Y     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2235551..2245841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M29_RS11480 (P0M29_11480) - 2235773..2237098 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  P0M29_RS11485 (P0M29_11485) - 2237233..2238000 (-) 768 WP_021494159.1 TatD family hydrolase -
  P0M29_RS11490 (P0M29_11490) metG 2238077..2240068 (-) 1992 WP_029974660.1 methionine--tRNA ligase -
  P0M29_RS11495 (P0M29_11495) abrB 2240551..2240841 (+) 291 WP_202622640.1 transition state genes transcriptional regulator AbrB Regulator
  P0M29_RS11500 (P0M29_11500) rsmI 2240890..2241771 (-) 882 WP_029974655.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P0M29_RS11505 (P0M29_11505) - 2241746..2242045 (-) 300 WP_029974654.1 GIY-YIG nuclease family protein -
  P0M29_RS11510 (P0M29_11510) - 2242032..2242775 (-) 744 WP_029974652.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P0M29_RS11515 (P0M29_11515) yabA 2242836..2243195 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  P0M29_RS11520 (P0M29_11520) ricT 2243210..2244037 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  P0M29_RS11525 (P0M29_11525) holB 2244040..2245029 (-) 990 WP_029974650.1 DNA polymerase III subunit delta' -
  P0M29_RS11530 (P0M29_11530) - 2245041..2245481 (-) 441 WP_029974647.1 DUF327 family protein -
  P0M29_RS11535 (P0M29_11535) darA 2245494..2245823 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10739.55 Da        Isoelectric Point: 6.3419

>NTDB_id=808181 P0M29_RS11495 WP_202622640.1 2240551..2240841(+) (abrB) [Bacillus velezensis strain 12Y]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
ADQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=808181 P0M29_RS11495 WP_202622640.1 2240551..2240841(+) (abrB) [Bacillus velezensis strain 12Y]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGATCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969