Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | OW489_RS07895 | Genome accession | NZ_AP026446 |
| Coordinates | 1643440..1643703 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177712.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain CHC155 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1638440..1648703
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OW489_RS08160 | - | 1638589..1640436 (-) | 1848 | Protein_1541 | hypothetical protein | - |
| OW489_RS07875 (CHC155_15390) | - | 1640481..1641646 (-) | 1166 | Protein_1542 | DHH family protein | - |
| OW489_RS07880 (CHC155_15410) | - | 1641777..1642565 (+) | 789 | WP_120856481.1 | integrase | - |
| OW489_RS07885 (CHC155_15420) | - | 1642669..1643148 (+) | 480 | WP_162966579.1 | hypothetical protein | - |
| OW489_RS07890 (CHC155_15430) | comB2 | 1643145..1643429 (+) | 285 | WP_000736478.1 | TrbC/VirB2 family protein | Machinery gene |
| OW489_RS07895 (CHC155_15440) | comB3 | 1643440..1643703 (+) | 264 | WP_001177712.1 | hypothetical protein | Machinery gene |
| OW489_RS07900 (CHC155_15450) | - | 1643714..1643950 (+) | 237 | WP_120824245.1 | hypothetical protein | - |
| OW489_RS07905 (CHC155_15460) | comB4 | 1643950..1646532 (+) | 2583 | WP_120856479.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| OW489_RS07910 | - | 1646529..1646663 (+) | 135 | WP_120856477.1 | type IV secretion system protein VirB7 | - |
| OW489_RS07915 (CHC155_15470) | - | 1646656..1647825 (+) | 1170 | WP_120856475.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10002.89 Da Isoelectric Point: 5.7206
>NTDB_id=80814 OW489_RS07895 WP_001177712.1 1643440..1643703(+) (comB3) [Helicobacter pylori strain CHC155]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=80814 OW489_RS07895 WP_001177712.1 1643440..1643703(+) (comB3) [Helicobacter pylori strain CHC155]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATTGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATTGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
59.77 |
100 |
0.598 |