Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HXS61_RS06735 | Genome accession | NZ_AP023046 |
| Coordinates | 1304262..1305374 (+) | Length | 370 a.a. |
| NCBI ID | WP_176486487.1 | Uniprot ID | - |
| Organism | Helicobacter suis strain NHP19-4022 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1299262..1310374
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS61_RS06700 (NHP194022_13350) | - | 1299677..1300063 (-) | 387 | WP_034375045.1 | hypothetical protein | - |
| HXS61_RS06705 (NHP194022_13360) | - | 1300056..1300331 (-) | 276 | WP_034375042.1 | DUF2018 family protein | - |
| HXS61_RS06710 (NHP194022_13370) | - | 1300331..1300771 (-) | 441 | WP_006564918.1 | DNA starvation/stationary phase protection protein | - |
| HXS61_RS06715 (NHP194022_13380) | - | 1300844..1301818 (-) | 975 | WP_006564919.1 | PAS domain-containing sensor histidine kinase | - |
| HXS61_RS06720 (NHP194022_13390) | - | 1301887..1302198 (-) | 312 | WP_006564920.1 | hypothetical protein | - |
| HXS61_RS06725 (NHP194022_13400) | - | 1302195..1303232 (-) | 1038 | WP_040499354.1 | flagellar basal body P-ring protein FlgI | - |
| HXS61_RS06730 (NHP194022_13410) | comB9 | 1303321..1304265 (+) | 945 | WP_006564967.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HXS61_RS06735 (NHP194022_13420) | comB10 | 1304262..1305374 (+) | 1113 | WP_176486487.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HXS61_RS06740 (NHP194022_13430) | - | 1305427..1306164 (+) | 738 | WP_006564924.1 | (Fe-S)-binding protein | - |
| HXS61_RS06745 (NHP194022_13440) | - | 1306161..1307606 (+) | 1446 | WP_006564925.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| HXS61_RS06750 (NHP194022_13450) | - | 1307599..1308243 (+) | 645 | WP_006564926.1 | lactate utilization protein C | - |
| HXS61_RS06755 (NHP194022_13460) | - | 1308252..1308707 (+) | 456 | WP_034375034.1 | peroxiredoxin | - |
| HXS61_RS06760 (NHP194022_13470) | rfaE1 | 1308896..1310320 (-) | 1425 | WP_034375031.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 41429.83 Da Isoelectric Point: 7.4578
>NTDB_id=80814 HXS61_RS06735 WP_176486487.1 1304262..1305374(+) (comB10) [Helicobacter suis strain NHP19-4022]
MNSLVKKLIIGLGMGVVIMASSLWWHKRNEQPEAVLEVEESNYPLSDYLFVPKQQQKEDPKDSEDYKRLEQILEENAKQI
TALKAQLKQASQKPPPQITPQPTQEPQIDSTQQDILASRIKAFEISQDEPKEQEPISVLDYGVDHFDNLKAKDVATHENR
LLRTITADKMIPAFLITPISSQLGGKVIAQVESDVFANMGRAILIPKGSKVIGYYNNNNKIGEYRLDIVWTRILTPQGVN
IMLTNAKGADVKGYSGLVGEMITHNFQRYGMPLLVSTISNGLLIALTSAIANKTGKNNFFGDYLLMQMTRQTGMGLNQIV
AQILRDKSNLKPIIIIREGSRVFIAPNLDIFFPVPKEGEILAQFFTHSLP
MNSLVKKLIIGLGMGVVIMASSLWWHKRNEQPEAVLEVEESNYPLSDYLFVPKQQQKEDPKDSEDYKRLEQILEENAKQI
TALKAQLKQASQKPPPQITPQPTQEPQIDSTQQDILASRIKAFEISQDEPKEQEPISVLDYGVDHFDNLKAKDVATHENR
LLRTITADKMIPAFLITPISSQLGGKVIAQVESDVFANMGRAILIPKGSKVIGYYNNNNKIGEYRLDIVWTRILTPQGVN
IMLTNAKGADVKGYSGLVGEMITHNFQRYGMPLLVSTISNGLLIALTSAIANKTGKNNFFGDYLLMQMTRQTGMGLNQIV
AQILRDKSNLKPIIIIREGSRVFIAPNLDIFFPVPKEGEILAQFFTHSLP
Nucleotide
Download Length: 1113 bp
>NTDB_id=80814 HXS61_RS06735 WP_176486487.1 1304262..1305374(+) (comB10) [Helicobacter suis strain NHP19-4022]
ATGAATTCTCTTGTTAAAAAGTTGATTATTGGATTGGGTATGGGTGTGGTGATCATGGCCTCTTCTCTTTGGTGGCATAA
AAGAAACGAACAACCGGAGGCCGTTTTAGAAGTAGAAGAATCTAACTATCCGCTTTCTGATTATTTATTTGTACCAAAAC
AACAACAAAAAGAAGATCCTAAGGATTCAGAGGATTACAAACGCCTAGAGCAAATATTAGAAGAAAATGCCAAGCAAATT
ACAGCTCTAAAGGCACAGCTTAAACAAGCATCACAAAAGCCACCGCCTCAAATAACCCCCCAGCCCACACAAGAGCCACA
GATAGATAGCACGCAACAAGATATACTAGCCTCTCGTATTAAAGCCTTTGAAATTTCTCAAGATGAGCCTAAAGAGCAAG
AACCAATTTCAGTACTAGACTATGGAGTTGATCATTTTGATAATCTCAAAGCTAAAGATGTGGCCACCCATGAAAATAGG
CTTTTGCGCACTATCACCGCTGATAAAATGATCCCCGCTTTTTTGATCACACCTATTAGCTCCCAGTTAGGCGGTAAGGT
TATTGCACAGGTAGAAAGCGATGTATTTGCTAACATGGGACGGGCTATTTTAATCCCCAAGGGCTCTAAAGTTATAGGTT
ATTACAATAATAACAACAAAATAGGCGAGTACCGCCTTGATATTGTGTGGACTCGTATCCTCACGCCACAAGGGGTTAAT
ATCATGCTCACAAACGCCAAAGGCGCAGATGTTAAAGGCTATAGTGGACTAGTAGGTGAGATGATCACGCATAATTTCCA
GCGCTATGGCATGCCTCTTTTAGTCTCTACCATTTCTAATGGCCTACTCATTGCGCTTACCTCAGCCATTGCCAATAAAA
CAGGTAAAAATAATTTCTTTGGCGATTATCTTTTAATGCAAATGACGCGCCAAACGGGCATGGGATTAAACCAAATTGTA
GCCCAGATTCTAAGAGATAAAAGCAATCTCAAGCCTATTATTATCATTAGAGAGGGGAGTAGAGTTTTTATCGCGCCTAA
TTTAGATATTTTTTTTCCTGTGCCTAAAGAGGGCGAGATATTAGCGCAGTTTTTTACCCATTCGTTGCCTTAG
ATGAATTCTCTTGTTAAAAAGTTGATTATTGGATTGGGTATGGGTGTGGTGATCATGGCCTCTTCTCTTTGGTGGCATAA
AAGAAACGAACAACCGGAGGCCGTTTTAGAAGTAGAAGAATCTAACTATCCGCTTTCTGATTATTTATTTGTACCAAAAC
AACAACAAAAAGAAGATCCTAAGGATTCAGAGGATTACAAACGCCTAGAGCAAATATTAGAAGAAAATGCCAAGCAAATT
ACAGCTCTAAAGGCACAGCTTAAACAAGCATCACAAAAGCCACCGCCTCAAATAACCCCCCAGCCCACACAAGAGCCACA
GATAGATAGCACGCAACAAGATATACTAGCCTCTCGTATTAAAGCCTTTGAAATTTCTCAAGATGAGCCTAAAGAGCAAG
AACCAATTTCAGTACTAGACTATGGAGTTGATCATTTTGATAATCTCAAAGCTAAAGATGTGGCCACCCATGAAAATAGG
CTTTTGCGCACTATCACCGCTGATAAAATGATCCCCGCTTTTTTGATCACACCTATTAGCTCCCAGTTAGGCGGTAAGGT
TATTGCACAGGTAGAAAGCGATGTATTTGCTAACATGGGACGGGCTATTTTAATCCCCAAGGGCTCTAAAGTTATAGGTT
ATTACAATAATAACAACAAAATAGGCGAGTACCGCCTTGATATTGTGTGGACTCGTATCCTCACGCCACAAGGGGTTAAT
ATCATGCTCACAAACGCCAAAGGCGCAGATGTTAAAGGCTATAGTGGACTAGTAGGTGAGATGATCACGCATAATTTCCA
GCGCTATGGCATGCCTCTTTTAGTCTCTACCATTTCTAATGGCCTACTCATTGCGCTTACCTCAGCCATTGCCAATAAAA
CAGGTAAAAATAATTTCTTTGGCGATTATCTTTTAATGCAAATGACGCGCCAAACGGGCATGGGATTAAACCAAATTGTA
GCCCAGATTCTAAGAGATAAAAGCAATCTCAAGCCTATTATTATCATTAGAGAGGGGAGTAGAGTTTTTATCGCGCCTAA
TTTAGATATTTTTTTTCCTGTGCCTAAAGAGGGCGAGATATTAGCGCAGTTTTTTACCCATTCGTTGCCTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
56.349 |
100 |
0.576 |