Detailed information NTG0808134

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: PZ898_RS11430
• Genome accession: NZ_CP120710
• Coordinates: 2560094..2561443 (+)
• Length: 449 a.a.
• NCBI ID: WP_062675900.1
• Uniprot ID: A0A420CHR1
• Organism: Chryseobacterium sp. WX
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2555094..2566443

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PZ898_RS11415 (PZ898_11415)	yidC	2555576..2557375 (-)	1800	WP_062675903.1	membrane protein insertase YidC	-
PZ898_RS11420 (PZ898_11420)	-	2557554..2559161 (-)	1608	WP_110008139.1	CTP synthase	-
PZ898_RS11425 (PZ898_11425)	-	2559386..2559955 (-)	570	WP_062675901.1	YceI family protein	-
PZ898_RS11430 (PZ898_11430)	radA	2560094..2561443 (+)	1350	WP_062675900.1	DNA repair protein RadA	Machinery gene
PZ898_RS11435 (PZ898_11435)	-	2561566..2562159 (+)	594	WP_062675899.1	ACP phosphodiesterase	-
PZ898_RS11440 (PZ898_11440)	-	2562165..2562680 (-)	516	WP_277695536.1	DUF6702 family protein	-
PZ898_RS11445 (PZ898_11445)	-	2562761..2565976 (-)	3216	WP_277695537.1	S8/S53 family peptidase	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49957.53 Da
• Isoelectric Point: 6.5083

>NTDB_id=808134 PZ898_RS11430 WP_062675900.1 2560094..2561443(+) (radA) [Chryseobacterium sp. WX]
MAKLKTAYFCQNCGTQYPQWLGQCKNCGEWNTLVEEVVEKPSHKTPPFSKTKQHVINIVEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide

• Length: 1350 bp

>NTDB_id=808134 PZ898_RS11430 WP_062675900.1 2560094..2561443(+) (radA) [Chryseobacterium sp. WX]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACCCAGTATCCTCAATGGCTGGGACAATGTAAAAACTG
TGGAGAATGGAACACTTTAGTAGAAGAGGTTGTAGAGAAACCTTCTCATAAAACTCCTCCTTTTTCAAAAACGAAACAAC
ATGTTATCAATATTGTTGAAGTAGAAACCAGCGAAGAACCTAGGATAAAAACCCCTTCTGAAGAACTGAACCGTGTTTTA
GGAGGCGGCATCGTTTTGGGGTCTGTAACTTTGATTGGTGGCGAACCGGGCATCGGAAAATCTACCCTTCTGCTTCAGCT
TGCTTTGAAAATGAAGAAAAAAGTTTTCTATGTTTCTGGTGAAGAAAGTGCTTCTCAGATCAAAATGAGAGCAGACAGGC
TTACGGATATTCAAAATCCGAACTGTTTCCTTTTCACAGAAACATCATTGGAAAAAATCCTTCATGAGGCCAAAAAACTG
GAGCCGGATTTCATGATTATTGATTCCATTCAAACGCTGCAGTCTCAATTGATAGAAAGTTCCCCGGGAACCGTATCCCA
AATCCGGGAATGCTCCAATGAGATCATCAAATATGCCAAAGAAAACAATACGCCTGTCTTTCTTGTAGGACATATTACCA
AAGACGGCCAAATTGCCGGACCAAAAGTACTGGAGCACATGGTAGATGTTGTTCTGAATTTTGATGGAGACCGAAATCAT
CTGTTCAGATTATTGAGAGCTAATAAAAACCGTTTTGGTTCTACCTCCGAAATTGGAATTTATGAAATGATTTCTCAGGG
ATTAAAAGAAATTAAAAACCCTTCGGAAATACTGATTACCAAGAAGTTTGAGGAACTTTCAGGAAACTCTGTTGCGGTAA
CTCTGGAAGGAAACAGGCCGATGCTTCTTGAAATACAGGCATTGGTAAGTACTGCCGTTTATGGTACTCCTCAAAGAAGC
AGCACCGGTTTTGATTCCAAAAGGCTGAATATGCTTTTGGCCGTACTGGAAAAAAGAGCTGGTTTTCAATTGGGAGCAAA
AGACGTTTTCCTGAATATTACCGGAGGAATAAAAACAGATGATCCGGCACTGGATCTGGCGGTCATTGCTTCTGTTCTTT
CTTCCAATGAAGATATTGCTATTTCTGAACATTACTGTTTTGCCGGAGAAATCGGATTAAGTGGCGAAATTCGTCCGGTA
GCACAGATTGAGCAGAGAATTACTGAGGCTGAAAAATTGGGGTATGAGAAAATATTTGTATCCAATCTTAATAAAATCCC
GAAAAGAAAATTTGGAATCAAGATTGAAGAAGTGAGTAAAATTGAGGATTTTCATGAGAGACTGTTCTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (338-423)

• AAA domain (AAA_25) (64-217)

3D structure

• AlphaFold DB: A0A420CHR1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.336	100	0.497
radA	Streptococcus pneumoniae Rx1	48.684	100	0.494
radA	Streptococcus pneumoniae D39	48.684	100	0.494
radA	Streptococcus pneumoniae R6	48.684	100	0.494
radA	Streptococcus pneumoniae TIGR4	48.684	100	0.494
radA	Streptococcus mitis NCTC 12261	48.684	100	0.494
radA	Streptococcus mitis SK321	50.591	94.209	0.477