Detailed information NTG0808119

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: PZ892_RS00775
• Genome accession: NZ_CP120709
• Coordinates: 180413..181801 (+)
• Length: 462 a.a.
• NCBI ID: WP_094257583.1
• Uniprot ID: -
• Organism: Sphingobacterium sp. WM
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 175413..186801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PZ892_RS00745 (PZ892_00745)	-	175587..176045 (+)	459	WP_094257577.1	hypothetical protein	-
PZ892_RS00750 (PZ892_00750)	-	176127..178127 (+)	2001	WP_277711960.1	ATP-binding protein	-
PZ892_RS00755 (PZ892_00755)	-	178228..178701 (+)	474	WP_094257579.1	DUF4293 domain-containing protein	-
PZ892_RS00760 (PZ892_00760)	-	178711..179184 (+)	474	WP_094257580.1	hypothetical protein	-
PZ892_RS00765 (PZ892_00765)	-	179208..179837 (-)	630	WP_182497842.1	hypothetical protein	-
PZ892_RS00770 (PZ892_00770)	-	179837..180343 (-)	507	WP_182497843.1	sigma-70 family RNA polymerase sigma factor	-
PZ892_RS00775 (PZ892_00775)	radA	180413..181801 (+)	1389	WP_094257583.1	DNA repair protein RadA	Machinery gene
PZ892_RS00780 (PZ892_00780)	-	181853..182977 (-)	1125	WP_094257584.1	TlpA disulfide reductase family protein	-
PZ892_RS00785 (PZ892_00785)	-	183023..183850 (-)	828	WP_182497844.1	TPM domain-containing protein	-
PZ892_RS00790 (PZ892_00790)	-	183855..184289 (-)	435	WP_182497845.1	TPM domain-containing protein	-
PZ892_RS00795 (PZ892_00795)	-	184375..184953 (-)	579	WP_094257586.1	LemA family protein	-
PZ892_RS00800 (PZ892_00800)	-	185105..186652 (+)	1548	WP_182497846.1	FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 51091.54 Da
• Isoelectric Point: 6.6481

>NTDB_id=808119 PZ892_RS00775 WP_094257583.1 180413..181801(+) (radA) [Sphingobacterium sp. WM]
MAKSKSAYFCQSCGYESPKWLGQCPSCKQWNTFVEEVVEKASSRVPEWRSTNTSPGVQKRTNKAAVIHEIVYSEEQRMLS
PDKEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPKVKTLYISGEESEQQIKMRAERLQQNSNANCYILTETSM
QNIFKQIDQVEPNVVVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETNTPVFIVGHITKDGSIAGPKVLEHMVDT
VLQFEGDRNHVYRILRSVKNRFGSSSELGIYEMQGSGLREVSNPSEIMLSQREEQVSGIAVAAMLEGLRPLMIEVQALVS
NSAYGTPQRSSTGFDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIAALISSQQDIALPSNITFAGE
VGLSGEIRAVNRIEQRIQEAEKLGFEQIFISKYNTKGLDVKRYQILVRPVATLEDVFRILFG

Nucleotide

• Length: 1389 bp

>NTDB_id=808119 PZ892_RS00775 WP_094257583.1 180413..181801(+) (radA) [Sphingobacterium sp. WM]
ATGGCAAAATCAAAATCAGCATATTTCTGTCAATCCTGTGGATATGAATCTCCTAAATGGTTAGGACAATGTCCTTCATG
TAAACAATGGAATACCTTTGTAGAAGAAGTGGTGGAAAAAGCTTCCAGCAGAGTACCTGAATGGCGTAGCACAAATACGA
GCCCTGGAGTACAAAAAAGAACCAATAAAGCAGCCGTCATCCACGAAATTGTCTATTCCGAAGAACAACGCATGTTATCC
CCGGATAAGGAATTCAATAGAGTGCTTGGAGGAGGTATAGTTCCGGGATCTTTGGTACTTATAGGTGGTGAACCTGGTAT
CGGGAAATCAACCTTGATGCTGCAATTAGCCCTGTCGATTCCAAAAGTTAAAACACTCTATATTTCAGGAGAGGAAAGTG
AACAGCAGATTAAAATGCGTGCAGAACGTTTGCAACAGAACTCCAATGCAAACTGCTATATCCTGACTGAAACTTCCATG
CAGAATATCTTCAAACAGATTGATCAGGTGGAACCAAATGTGGTGGTGATTGACTCCATTCAAACCCTTCATTCTGCTCA
AATCGAATCTGCACCCGGATCTGTATCTCAAGTTAGAGAGTGTACCGCTGAATTATTACGATTTGCTAAGGAAACCAACA
CTCCGGTATTTATTGTAGGCCATATCACAAAAGATGGTTCTATTGCGGGGCCAAAAGTATTGGAACATATGGTGGATACT
GTCCTGCAATTTGAAGGCGATCGAAACCATGTTTACAGAATCTTGCGTTCTGTAAAAAACAGATTCGGCTCTTCTTCTGA
ATTGGGAATATATGAAATGCAAGGCTCAGGTTTACGGGAGGTTTCCAACCCTTCAGAAATCATGCTCTCCCAAAGGGAAG
AACAGGTGAGTGGAATTGCCGTTGCAGCTATGTTGGAAGGCTTGAGGCCGCTGATGATTGAGGTTCAGGCATTGGTGTCC
AATTCTGCTTACGGAACCCCTCAGCGGAGCTCTACAGGTTTTGATACCAAAAGATTAAATATGCTCCTTGCCGTATTAGA
GAAACGCTTTGGATTCCGCTTAAGTGCTCAGGATGTATTCTTAAATATAGCCGGTGGATTGAGAGTGGAAGATCCTGCCA
TTGACCTCGCGGTCATTGCAGCCCTAATCTCCTCCCAACAAGATATCGCCCTCCCTTCTAATATTACTTTTGCAGGCGAA
GTAGGCCTTTCAGGTGAGATACGTGCTGTAAATCGAATTGAACAACGAATTCAAGAAGCCGAGAAACTAGGCTTTGAACA
GATCTTTATCTCTAAATATAATACCAAAGGACTCGATGTTAAAAGATACCAGATATTGGTAAGACCAGTTGCAACCCTGG
AAGATGTCTTTCGAATCCTATTCGGATAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (348-434)

• AAA domain (AAA_25) (80-226)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	53.233	100	0.535
radA	Streptococcus pneumoniae Rx1	49.351	100	0.494
radA	Streptococcus pneumoniae D39	49.351	100	0.494
radA	Streptococcus pneumoniae R6	49.351	100	0.494
radA	Streptococcus pneumoniae TIGR4	49.351	100	0.494
radA	Streptococcus mitis NCTC 12261	49.351	100	0.494
radA	Streptococcus mitis SK321	49.351	100	0.494