Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   P4B24_RS27720 Genome accession   NZ_CP120708
Coordinates   5819540..5820097 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY7723     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5814540..5825097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B24_RS27700 (P4B24_27705) pilR 5815816..5817153 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  P4B24_RS27705 (P4B24_27710) thiO 5817199..5818293 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  P4B24_RS27710 (P4B24_27715) - 5818428..5818937 (+) 510 WP_017002065.1 Tfp pilus assembly protein FimT/FimU -
  P4B24_RS27715 (P4B24_27720) - 5819043..5819549 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  P4B24_RS27720 (P4B24_27725) pilV 5819540..5820097 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  P4B24_RS27725 (P4B24_27730) pilW 5820094..5820918 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  P4B24_RS27730 (P4B24_27735) pilX 5820915..5821502 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  P4B24_RS27735 (P4B24_27740) pilY1 5821514..5825005 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=808111 P4B24_RS27720 WP_003119423.1 5819540..5820097(+) (pilV) [Pseudomonas aeruginosa strain NY7723]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=808111 P4B24_RS27720 WP_003119423.1 5819540..5820097(+) (pilV) [Pseudomonas aeruginosa strain NY7723]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995