Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   OW489_RS07050 Genome accession   NZ_AP026446
Coordinates   1466735..1467784 (-) Length   349 a.a.
NCBI ID   WP_267285956.1    Uniprot ID   -
Organism   Helicobacter pylori strain CHC155     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1461735..1472784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OW489_RS07030 (CHC155_13750) rpsL 1462862..1463269 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  OW489_RS07035 (CHC155_13760) rpsG 1463285..1463752 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  OW489_RS07040 (CHC155_13770) fusA 1463764..1465842 (+) 2079 WP_000101843.1 elongation factor G -
  OW489_RS07045 (CHC155_13780) - 1466385..1466549 (+) 165 WP_000744175.1 hypothetical protein -
  OW489_RS07050 (CHC155_13790) waaF 1466735..1467784 (-) 1050 WP_267285956.1 lipopolysaccharide heptosyltransferase II Regulator
  OW489_RS07055 (CHC155_13800) hisS 1467846..1469174 (+) 1329 WP_120856640.1 histidine--tRNA ligase -
  OW489_RS07060 (CHC155_13810) asd 1469161..1470201 (+) 1041 WP_120824481.1 aspartate-semialdehyde dehydrogenase -
  OW489_RS07065 (CHC155_13820) - 1470631..1471803 (+) 1173 WP_267285957.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39434.31 Da        Isoelectric Point: 9.8824

>NTDB_id=80810 OW489_RS07050 WP_267285956.1 1466735..1467784(-) (waaF) [Helicobacter pylori strain CHC155]
MSVNAPKRMRILLRLPNWLGDGVMASPLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAKAAAALLEKGHEIYFFGAKEDTIVSEEILKLIKGLLKNPLLSR
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVATSTQTPLIALFGPTDEKETSPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=80810 OW489_RS07050 WP_267285956.1 1466735..1467784(-) (waaF) [Helicobacter pylori strain CHC155]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCCC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCACATTTTATCTTAGTAGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTCAGCCATGCGGTAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCCAAAGCCGCTGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCGT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTACTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTGCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.941

97.421

0.37

Multiple sequence alignment