Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HXS61_RS02015 | Genome accession | NZ_AP023046 |
| Coordinates | 395537..395806 (-) | Length | 89 a.a. |
| NCBI ID | WP_034376154.1 | Uniprot ID | A0A6J4CZS1 |
| Organism | Helicobacter suis strain NHP19-4022 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 390537..400806
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS61_RS02000 (NHP194022_04090) | - | 391613..393919 (-) | 2307 | WP_232087246.1 | TonB-dependent receptor family protein | - |
| HXS61_RS02005 (NHP194022_04100) | fliW | 394063..394470 (+) | 408 | WP_006564742.1 | flagellar assembly protein FliW | - |
| HXS61_RS02010 (NHP194022_04110) | murG | 394472..395554 (+) | 1083 | WP_064430110.1 | undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | - |
| HXS61_RS02015 (NHP194022_04120) | comB3 | 395537..395806 (-) | 270 | WP_034376154.1 | hypothetical protein | Machinery gene |
| HXS61_RS02020 (NHP194022_04130) | comB2 | 395807..396073 (-) | 267 | WP_034376157.1 | TrbC/VirB2 family protein | Machinery gene |
| HXS61_RS02025 (NHP194022_04140) | - | 396367..397152 (+) | 786 | WP_006565183.1 | HrcA family transcriptional regulator | - |
| HXS61_RS02030 (NHP194022_04150) | grpE | 397149..397679 (+) | 531 | WP_006565184.1 | nucleotide exchange factor GrpE | - |
| HXS61_RS02035 (NHP194022_04160) | dnaK | 397701..399566 (+) | 1866 | WP_040499279.1 | molecular chaperone DnaK | - |
Sequence
Protein
Download Length: 89 a.a. Molecular weight: 10325.31 Da Isoelectric Point: 7.9966
>NTDB_id=80806 HXS61_RS02015 WP_034376154.1 395537..395806(-) (comB3) [Helicobacter suis strain NHP19-4022]
MHYPLLVVSVPNLKEISTKEKFLWLNAKSWIVSIFIPFICWPWLGTLATLFFYAGFLLLFSVLEFFDEDIADILIARSKL
KTKASSFYA
MHYPLLVVSVPNLKEISTKEKFLWLNAKSWIVSIFIPFICWPWLGTLATLFFYAGFLLLFSVLEFFDEDIADILIARSKL
KTKASSFYA
Nucleotide
Download Length: 270 bp
>NTDB_id=80806 HXS61_RS02015 WP_034376154.1 395537..395806(-) (comB3) [Helicobacter suis strain NHP19-4022]
ATGCATTATCCCTTATTAGTGGTTTCTGTCCCTAATCTTAAAGAGATTTCTACCAAAGAAAAATTTCTCTGGCTCAATGC
TAAATCATGGATTGTCTCTATTTTTATCCCTTTTATATGCTGGCCATGGCTTGGTACTCTAGCGACGCTATTTTTTTATG
CGGGTTTTTTATTGCTCTTTAGCGTGTTAGAGTTTTTTGATGAAGACATTGCTGATATTTTAATTGCTCGCTCTAAACTT
AAGACAAAAGCTTCAAGCTTTTACGCCTGA
ATGCATTATCCCTTATTAGTGGTTTCTGTCCCTAATCTTAAAGAGATTTCTACCAAAGAAAAATTTCTCTGGCTCAATGC
TAAATCATGGATTGTCTCTATTTTTATCCCTTTTATATGCTGGCCATGGCTTGGTACTCTAGCGACGCTATTTTTTTATG
CGGGTTTTTTATTGCTCTTTAGCGTGTTAGAGTTTTTTGATGAAGACATTGCTGATATTTTAATTGCTCGCTCTAAACTT
AAGACAAAAGCTTCAAGCTTTTACGCCTGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
62.353 |
95.506 |
0.596 |