Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HXS61_RS01415 | Genome accession | NZ_AP023046 |
| Coordinates | 270586..270849 (+) | Length | 87 a.a. |
| NCBI ID | WP_034375715.1 | Uniprot ID | - |
| Organism | Helicobacter suis strain NHP19-4022 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 265586..275849
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS61_RS01390 (NHP194022_02840) | - | 265795..267195 (-) | 1401 | WP_176486375.1 | NAD(P)H-hydrate dehydratase | - |
| HXS61_RS01395 (NHP194022_02850) | - | 267335..268510 (+) | 1176 | WP_064430215.1 | site-specific DNA-methyltransferase | - |
| HXS61_RS01400 (NHP194022_02860) | - | 268497..269363 (+) | 867 | WP_176486376.1 | CfrBI family restriction endonuclease | - |
| HXS61_RS01405 (NHP194022_02870) | - | 269533..270303 (+) | 771 | WP_034375711.1 | hypothetical protein | - |
| HXS61_RS01410 (NHP194022_02880) | comB2 | 270336..270575 (+) | 240 | WP_050780158.1 | TrbC/VirB2 family protein | Machinery gene |
| HXS61_RS01415 (NHP194022_02890) | comB3 | 270586..270849 (+) | 264 | WP_034375715.1 | hypothetical protein | Machinery gene |
| HXS61_RS01420 (NHP194022_02900) | - | 270869..271189 (+) | 321 | WP_034375717.1 | hypothetical protein | - |
| HXS61_RS01425 | - | 271202..273637 (+) | 2436 | Protein_291 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| HXS61_RS01430 (NHP194022_02940) | - | 273861..274964 (+) | 1104 | WP_176486377.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9910.98 Da Isoelectric Point: 8.9498
>NTDB_id=80804 HXS61_RS01415 WP_034375715.1 270586..270849(+) (comB3) [Helicobacter suis strain NHP19-4022]
MQVVQVSVPNLREISSKEKFLWLNAKSFLICLLVPFVLLPTIGVLYALLLYGVLLLVFSILEFFDEDISDILVARSKIKT
KSTKFYA
MQVVQVSVPNLREISSKEKFLWLNAKSFLICLLVPFVLLPTIGVLYALLLYGVLLLVFSILEFFDEDISDILVARSKIKT
KSTKFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=80804 HXS61_RS01415 WP_034375715.1 270586..270849(+) (comB3) [Helicobacter suis strain NHP19-4022]
ATGCAAGTTGTGCAGGTGAGTGTGCCTAATCTAAGAGAAATCTCTAGCAAAGAAAAATTCTTATGGCTCAATGCCAAAAG
TTTTTTAATCTGCTTGCTTGTGCCCTTCGTGTTACTACCCACTATTGGAGTCTTATATGCCTTGCTGCTCTATGGTGTGC
TTTTATTAGTGTTTAGCATTTTAGAATTTTTTGATGAAGACATTAGCGATATTCTAGTTGCGCGCTCTAAAATCAAAACT
AAGAGCACAAAATTTTATGCGTGA
ATGCAAGTTGTGCAGGTGAGTGTGCCTAATCTAAGAGAAATCTCTAGCAAAGAAAAATTCTTATGGCTCAATGCCAAAAG
TTTTTTAATCTGCTTGCTTGTGCCCTTCGTGTTACTACCCACTATTGGAGTCTTATATGCCTTGCTGCTCTATGGTGTGC
TTTTATTAGTGTTTAGCATTTTAGAATTTTTTGATGAAGACATTAGCGATATTCTAGTTGCGCGCTCTAAAATCAAAACT
AAGAGCACAAAATTTTATGCGTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
63.218 |
100 |
0.632 |