Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HXS61_RS01410 Genome accession   NZ_AP023046
Coordinates   270336..270575 (+) Length   79 a.a.
NCBI ID   WP_050780158.1    Uniprot ID   -
Organism   Helicobacter suis strain NHP19-4022     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 265336..275575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS61_RS01390 (NHP194022_02840) - 265795..267195 (-) 1401 WP_176486375.1 NAD(P)H-hydrate dehydratase -
  HXS61_RS01395 (NHP194022_02850) - 267335..268510 (+) 1176 WP_064430215.1 site-specific DNA-methyltransferase -
  HXS61_RS01400 (NHP194022_02860) - 268497..269363 (+) 867 WP_176486376.1 CfrBI family restriction endonuclease -
  HXS61_RS01405 (NHP194022_02870) - 269533..270303 (+) 771 WP_034375711.1 hypothetical protein -
  HXS61_RS01410 (NHP194022_02880) comB2 270336..270575 (+) 240 WP_050780158.1 TrbC/VirB2 family protein Machinery gene
  HXS61_RS01415 (NHP194022_02890) comB3 270586..270849 (+) 264 WP_034375715.1 hypothetical protein Machinery gene
  HXS61_RS01420 (NHP194022_02900) - 270869..271189 (+) 321 WP_034375717.1 hypothetical protein -
  HXS61_RS01425 - 271202..273637 (+) 2436 Protein_291 VirB4 family type IV secretion/conjugal transfer ATPase -
  HXS61_RS01430 (NHP194022_02940) - 273861..274964 (+) 1104 WP_176486377.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8674.42 Da        Isoelectric Point: 10.3199

>NTDB_id=80803 HXS61_RS01410 WP_050780158.1 270336..270575(+) (comB2) [Helicobacter suis strain NHP19-4022]
MGVLQAGGLENLQNAIQSWLSSGSAKLILTIIFIGIGIFVWKNLDRWKEILLTVLGVVLGSLVFFGAPKLSAWLMQIFQ

Nucleotide


Download         Length: 240 bp        

>NTDB_id=80803 HXS61_RS01410 WP_050780158.1 270336..270575(+) (comB2) [Helicobacter suis strain NHP19-4022]
ATGGGAGTATTGCAAGCTGGGGGCTTGGAGAATCTGCAAAATGCCATCCAATCTTGGTTAAGTAGTGGCAGTGCCAAACT
AATTTTAACCATCATCTTCATAGGCATTGGTATCTTTGTGTGGAAAAACTTGGATCGGTGGAAAGAGATTTTGTTGACAG
TTCTAGGCGTGGTGTTAGGCTCTTTAGTCTTTTTTGGTGCGCCTAAGCTATCTGCTTGGTTGATGCAAATTTTTCAATAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

60

94.937

0.57

Multiple sequence alignment