Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RNU01_RS09945 Genome accession   NZ_CP134801
Coordinates   1967561..1968643 (-) Length   360 a.a.
NCBI ID   WP_001808057.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA73_2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1962561..1973643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNU01_RS09925 - 1963170..1963274 (-) 105 WP_001790092.1 hypothetical protein -
  RNU01_RS09930 secA 1963316..1965847 (-) 2532 WP_000506408.1 preprotein translocase subunit SecA -
  RNU01_RS09935 hpf 1966261..1966833 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RNU01_RS09940 - 1966894..1967568 (-) 675 WP_001057965.1 ComF family protein -
  RNU01_RS09945 comFA 1967561..1968643 (-) 1083 WP_001808057.1 DEAD/DEAH box helicase Machinery gene
  RNU01_RS09950 fakB1 1969007..1969873 (-) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  RNU01_RS09955 - 1970017..1970658 (+) 642 WP_000192947.1 YigZ family protein -
  RNU01_RS09960 - 1970829..1971884 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  RNU01_RS09965 - 1972202..1973272 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42049.57 Da        Isoelectric Point: 9.6803

>NTDB_id=808006 RNU01_RS09945 WP_001808057.1 1967561..1968643(-) (comFA) [Staphylococcus aureus strain SA73_2]
MDNVTRYKITESSQSSSQAYYHLSFEMSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYIQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=808006 RNU01_RS09945 WP_001808057.1 1967561..1968643(-) (comFA) [Staphylococcus aureus strain SA73_2]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAAAT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATATTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364