Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   RNU01_RS07670 Genome accession   NZ_CP134801
Coordinates   1499188..1500339 (-) Length   383 a.a.
NCBI ID   WP_113556006.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA73_2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1494188..1505339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNU01_RS07650 - 1494584..1495381 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  RNU01_RS07655 - 1495555..1495770 (+) 216 WP_000026308.1 hypothetical protein -
  RNU01_RS07660 rny 1496067..1497626 (-) 1560 WP_001050913.1 ribonuclease Y -
  RNU01_RS07665 recA 1497980..1499023 (-) 1044 WP_000368166.1 recombinase RecA Machinery gene
  RNU01_RS07670 cinA 1499188..1500339 (-) 1152 WP_113556006.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  RNU01_RS07675 pgsA 1500566..1501144 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RNU01_RS07680 - 1501178..1501570 (-) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  RNU01_RS07685 - 1501589..1502416 (-) 828 WP_000214890.1 YmfK family protein -
  RNU01_RS07690 ymfI 1502521..1503225 (-) 705 WP_000646231.1 elongation factor P 5-aminopentanone reductase -
  RNU01_RS07695 yfmH 1503225..1504511 (-) 1287 WP_001566607.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43295.60 Da        Isoelectric Point: 6.1914

>NTDB_id=807984 RNU01_RS07670 WP_113556006.1 1499188..1500339(-) (cinA) [Staphylococcus aureus strain SA73_2]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYVLIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=807984 RNU01_RS07670 WP_113556006.1 1499188..1500339(-) (cinA) [Staphylococcus aureus strain SA73_2]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGTGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431