Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   P4B08_RS25305 Genome accession   NZ_CP120704
Coordinates   5452984..5453541 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SE5356     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5447984..5458541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B08_RS25285 (P4B08_25295) pilR 5449260..5450597 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  P4B08_RS25290 (P4B08_25300) thiO 5450643..5451737 (-) 1095 WP_020750388.1 glycine oxidase ThiO -
  P4B08_RS25295 (P4B08_25305) - 5451872..5452381 (+) 510 WP_017002065.1 Tfp pilus assembly protein FimT/FimU -
  P4B08_RS25300 (P4B08_25310) - 5452487..5452993 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  P4B08_RS25305 (P4B08_25315) pilV 5452984..5453541 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  P4B08_RS25310 (P4B08_25320) pilW 5453538..5454362 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  P4B08_RS25315 (P4B08_25325) pilX 5454359..5454946 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  P4B08_RS25320 (P4B08_25330) pilY1 5454958..5458449 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=807977 P4B08_RS25305 WP_003119423.1 5452984..5453541(+) (pilV) [Pseudomonas aeruginosa strain SE5356]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=807977 P4B08_RS25305 WP_003119423.1 5452984..5453541(+) (pilV) [Pseudomonas aeruginosa strain SE5356]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995