Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HXS60_RS04910 Genome accession   NZ_AP023042
Coordinates   952111..952884 (+) Length   257 a.a.
NCBI ID   WP_034376902.1    Uniprot ID   -
Organism   Helicobacter suis strain NHP19-4004     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 947111..957884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS60_RS04875 (NHP194004_09760) - 947385..948494 (-) 1110 WP_050780196.1 DUF354 domain-containing protein -
  HXS60_RS04880 (NHP194004_09770) - 948491..949201 (-) 711 WP_006564435.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  HXS60_RS04890 - 949513..949653 (+) 141 WP_176486705.1 hypothetical protein -
  HXS60_RS04895 (NHP194004_09790) - 949755..950183 (-) 429 WP_034376904.1 hypothetical protein -
  HXS60_RS04900 (NHP194004_09800) - 950167..950853 (-) 687 WP_006565316.1 Bax inhibitor-1/YccA family protein -
  HXS60_RS04905 (NHP194004_09810) - 950963..951970 (+) 1008 WP_006564433.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  HXS60_RS04910 (NHP194004_09820) comB8 952111..952884 (+) 774 WP_034376902.1 VirB8/TrbF family protein Machinery gene
  HXS60_RS04915 (NHP194004_09830) gatB 952889..954319 (-) 1431 WP_176486706.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  HXS60_RS04920 (NHP194004_09840) hemH 954540..955559 (+) 1020 WP_006564431.1 ferrochelatase -
  HXS60_RS04925 (NHP194004_09850) - 955550..956185 (+) 636 WP_064429860.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29523.10 Da        Isoelectric Point: 9.0939

>NTDB_id=80795 HXS60_RS04910 WP_034376902.1 952111..952884(+) (comB8) [Helicobacter suis strain NHP19-4004]
MDSKEQDLLKEQLFHELYLKIQENQAKLEQEMASKIESLALSHLDLNSVFRIERRNSAMAYKLVVLLSLISLALTVALII
LLPLKQTQHHFIDFANQDKHYAIIQRADANLASNEALVRSLVGQYILNRESINHIDDQNRYEVVRLQSNSSVWHVFESLV
ASKNSIYTAPKMDRDIHIVNIALLKHSKNQNIAHVQIVAKLFDAGQLIQQKRYNIVLSFTFLPPPSFDTTMMPKNPTGFQ
VSRYSVTEMQDLKTLKP

Nucleotide


Download         Length: 774 bp        

>NTDB_id=80795 HXS60_RS04910 WP_034376902.1 952111..952884(+) (comB8) [Helicobacter suis strain NHP19-4004]
ATGGATTCTAAGGAGCAAGACCTCCTCAAAGAACAACTTTTTCACGAATTGTATTTAAAAATCCAAGAGAATCAAGCCAA
ATTAGAACAGGAAATGGCTAGTAAGATTGAAAGTTTGGCTTTATCACACCTAGATTTAAATAGTGTGTTTCGGATTGAAA
GACGCAATAGTGCTATGGCTTATAAACTTGTGGTGCTATTAAGTCTGATTAGTTTAGCTTTAACCGTTGCGTTAATTATT
CTCTTGCCTCTTAAACAAACCCAGCACCATTTTATTGACTTTGCTAACCAAGATAAACACTATGCCATTATCCAAAGAGC
CGATGCAAATTTAGCCAGTAACGAAGCTTTAGTGCGTTCATTAGTAGGCCAATACATTTTAAACCGCGAATCTATTAACC
ACATTGACGATCAAAACCGCTATGAAGTGGTGCGTTTACAAAGTAACTCGTCAGTTTGGCATGTTTTTGAAAGTCTAGTC
GCCTCTAAAAATAGCATTTACACCGCCCCTAAAATGGATCGCGATATTCATATCGTCAATATTGCCTTGCTTAAACATTC
TAAGAATCAAAATATCGCCCATGTACAAATTGTGGCTAAACTCTTTGATGCGGGGCAATTAATCCAGCAAAAGCGCTATA
ACATCGTGCTTAGCTTTACTTTTTTGCCCCCGCCTTCTTTTGATACAACCATGATGCCTAAAAACCCTACTGGCTTTCAA
GTCAGCCGCTACAGCGTAACTGAAATGCAAGATCTAAAAACCCTCAAACCCTAA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(54-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

52.033

95.72

0.498

Multiple sequence alignment