Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OW489_RS04470 Genome accession   NZ_AP026446
Coordinates   951352..952872 (-) Length   506 a.a.
NCBI ID   WP_267285832.1    Uniprot ID   -
Organism   Helicobacter pylori strain CHC155     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 946352..957872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OW489_RS04460 (CHC155_08880) - 948002..949231 (-) 1230 WP_267285830.1 restriction endonuclease subunit S -
  OW489_RS04465 (CHC155_08890) - 949267..951327 (-) 2061 WP_267285831.1 heavy metal translocating P-type ATPase -
  OW489_RS04470 (CHC155_08900) comM 951352..952872 (-) 1521 WP_267285832.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OW489_RS04475 (CHC155_08910) def 952875..953402 (-) 528 WP_154548311.1 peptide deformylase -
  OW489_RS04480 (CHC155_08920) clpP 953407..953994 (-) 588 WP_017280316.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  OW489_RS04485 (CHC155_08930) tig 954017..955372 (-) 1356 WP_267285833.1 trigger factor -
  OW489_RS04490 (CHC155_08940) - 955485..956318 (-) 834 WP_120823961.1 outer membrane protein -
  OW489_RS04495 (CHC155_08950) hpaA 956351..957133 (-) 783 WP_120823960.1 flagellar sheath lipoprotein HpaA -
  OW489_RS04500 (CHC155_08960) moaC 957252..957728 (-) 477 WP_120823959.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57167.17 Da        Isoelectric Point: 8.3918

>NTDB_id=80795 OW489_RS04470 WP_267285832.1 951352..952872(-) (comM) [Helicobacter pylori strain CHC155]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSITKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=80795 OW489_RS04470 WP_267285832.1 951352..952872(-) (comM) [Helicobacter pylori strain CHC155]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTTCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAGGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAATTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGACTTTAAAGAAGTTAAGGGGCAAGCTGTCGCCAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATCAATCGC
ATGCGTTATATCTTGCCCCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCATTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGGTTTCACGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGTATAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCACCAATTGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGCTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAACATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

36.008

100

0.364

Multiple sequence alignment