Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RI132_RS05790 Genome accession   NZ_CP134783
Coordinates   1240687..1241553 (+) Length   288 a.a.
NCBI ID   WP_011080789.1    Uniprot ID   A0A3Q0L702
Organism   Vibrio vulnificus strain GCU-01     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235687..1246553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS05775 (RI132_05775) - 1236735..1237757 (+) 1023 WP_011080792.1 ABC transporter permease subunit -
  RI132_RS05780 (RI132_05780) - 1237757..1238800 (+) 1044 WP_011080791.1 ABC transporter permease -
  RI132_RS05785 (RI132_05785) - 1238827..1240668 (+) 1842 WP_130191624.1 extracellular solute-binding protein -
  RI132_RS05790 (RI132_05790) amiE 1240687..1241553 (+) 867 WP_011080789.1 ABC transporter ATP-binding protein Regulator
  RI132_RS05795 (RI132_05795) - 1241556..1242386 (+) 831 WP_011080788.1 ABC transporter ATP-binding protein -
  RI132_RS05800 (RI132_05800) - 1242617..1243483 (+) 867 WP_175546481.1 hypothetical protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32120.52 Da        Isoelectric Point: 5.1128

>NTDB_id=807884 RI132_RS05790 WP_011080789.1 1240687..1241553(+) (amiE) [Vibrio vulnificus strain GCU-01]
MNSEVVLSVKNLETEFQTDDGAVQVLHGVSFDVKKGRTLGLVGESGCGKSVTSMSIMGLLPKPYGRVIGGEILYRGKDLV
TLPADEMYAMRGDRISIIFQDPMTALNPVHTVGKQLMEVLKLHRPDLDRKARREQALEMLKKVRIPMPEKRLDEYPHNLS
GGMRQRVMIAMALACKPEILICDEPTTALDVTVQASILELINELQEETGMAVIFITHDLGVVAEICDDVAVMYGGKIVEY
ADVFELFDAPKHPYTERLMGLMPSLEHEPKQLIEIKPIDVSKFPEFRG

Nucleotide


Download         Length: 867 bp        

>NTDB_id=807884 RI132_RS05790 WP_011080789.1 1240687..1241553(+) (amiE) [Vibrio vulnificus strain GCU-01]
ATGAACAGTGAAGTAGTTCTAAGCGTTAAAAACTTAGAGACTGAGTTTCAAACGGATGATGGTGCTGTACAAGTACTCCA
CGGTGTAAGTTTTGATGTAAAAAAAGGACGTACACTAGGTTTGGTTGGCGAATCTGGATGCGGGAAAAGTGTCACGTCCA
TGTCTATCATGGGCTTGCTACCTAAGCCGTACGGACGAGTTATTGGTGGCGAAATCCTCTATCGAGGCAAAGATCTCGTC
ACACTTCCAGCGGATGAAATGTATGCCATGCGTGGCGATCGTATTTCGATCATCTTCCAAGATCCTATGACAGCACTCAA
TCCTGTCCATACGGTAGGTAAGCAGCTTATGGAAGTATTGAAGCTTCATCGACCTGATTTGGATAGAAAAGCCCGTCGTG
AACAGGCGTTGGAAATGTTGAAAAAAGTTCGCATCCCAATGCCTGAAAAGCGCTTAGATGAGTACCCACATAATTTATCT
GGTGGTATGAGACAGCGAGTCATGATCGCAATGGCGTTGGCTTGCAAGCCTGAGATCCTGATTTGCGACGAACCCACAAC
CGCTCTAGATGTTACCGTTCAGGCCTCAATTTTGGAGTTGATTAACGAACTGCAAGAAGAGACCGGCATGGCGGTTATCT
TTATTACCCATGATCTCGGTGTCGTTGCGGAGATATGTGATGATGTAGCGGTCATGTATGGCGGCAAGATAGTCGAATAT
GCCGATGTTTTTGAATTGTTTGATGCCCCTAAACACCCTTATACAGAACGGTTGATGGGATTGATGCCAAGTTTAGAGCA
TGAACCTAAACAATTGATCGAAATTAAGCCGATTGACGTTTCAAAATTTCCTGAGTTTCGAGGTTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-276)

ABC transporter (ABC_tran)

(26-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L702

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

50.909

95.486

0.486
  amiE Streptococcus thermophilus LMD-9

50.909

95.486

0.486
  amiE Streptococcus salivarius strain HSISS4

50.545

95.486

0.483
  oppD Streptococcus mutans UA159

50.379

91.667

0.462