Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   RI132_RS04365 Genome accession   NZ_CP134783
Coordinates   916508..919912 (+) Length   1134 a.a.
NCBI ID   WP_130191213.1    Uniprot ID   -
Organism   Vibrio vulnificus strain GCU-01     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 911508..924912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS04340 (RI132_04340) sucC 911695..912861 (+) 1167 WP_011078272.1 ADP-forming succinate--CoA ligase subunit beta -
  RI132_RS04345 (RI132_04345) sucD 912861..913733 (+) 873 WP_011149794.1 succinate--CoA ligase subunit alpha -
  RI132_RS04350 (RI132_04350) znuB 913816..914601 (-) 786 WP_039553087.1 zinc ABC transporter permease subunit ZnuB -
  RI132_RS04355 (RI132_04355) znuC 914594..915379 (-) 786 WP_011078269.1 zinc ABC transporter ATP-binding protein ZnuC -
  RI132_RS04360 (RI132_04360) znuA 915461..916336 (+) 876 WP_039553089.1 zinc ABC transporter substrate-binding protein ZnuA -
  RI132_RS04365 (RI132_04365) tfoS 916508..919912 (+) 3405 WP_130191213.1 AraC family transcriptional regulator Regulator
  RI132_RS04370 (RI132_04370) - 920699..920926 (+) 228 WP_011149798.1 FeoA family protein -
  RI132_RS04375 (RI132_04375) feoB 920926..923204 (+) 2279 Protein_829 Fe(2+) transporter permease subunit FeoB -
  RI132_RS04380 (RI132_04380) - 923201..923431 (+) 231 WP_011078264.1 FeoC-like transcriptional regulator -
  RI132_RS04385 (RI132_04385) - 923540..923968 (-) 429 WP_011078263.1 HIT domain-containing protein -

Sequence

Protein


Download         Length: 1134 a.a.        Molecular weight: 126673.32 Da        Isoelectric Point: 5.3333

>NTDB_id=807871 RI132_RS04365 WP_130191213.1 916508..919912(+) (tfoS) [Vibrio vulnificus strain GCU-01]
MLRILAWLLLAGLTLPFKVLALDGNSAIFYPLPGQEQGTFVAAKNLFVGGDGGLWIHDVHGKVQYFDGNTLLPKRGSLLE
YPSEQVAFHQGSFWTFVANEVFQTYPNQKRQLAFSLNPGAEIRKIGSSDGHIWVSDGINFYDYDIESKELKTYSLLSLYQ
NNQSSYVYINDAKRVLSKWVLGTTSGAYLSQGEQFTHIKASAKHFVAKLYFSPTRRELLVGTLNGAALIDILKPTQKNIM
IGESHVLSMTETNQEYWIGTEHGLYSYSFLTGQVAKVKAAGAQDVSPDNRKIYSLVNDEQGGIWVATNSGILYYSLFGRK
FERLNNITEEKASRFNGNITKIVYASDETIWFKDANNLYRAIGVNKQYSRVRLPIKVNDFALEDGNIWIASEQGLYIYDT
NQYKLRSFDLPSYLKGKEIDFVSVSPQGKVWISSGYRLAAIGVADGRFQDYGDRWIASQNLPARILGLEVDQKVPLIVRT
DHGAYVLENDKIRFERNTQSFGESVDIAEAKDGSLWFAGTHGIYRKDPTEKTLGELALPQENVKPICLVTDASGIWMVSS
IGLSFYNFDGELRKHFGSRSGIMSNEFVEGACAASFGEAQSGSVLVLGSKYGLVFADRDDLMVSKLPEPRVVISQVRIDD
QVANIGQKEWQLPELAYGSAISFGLGVMPNAYGETLYYRLNQEHWQTTEAGQVSFEHLAAGDYLLSVKTSLVAGDSVQVR
FTVLHPWYQTTMAMAIFVLLIVALGGLVVFWRSRYVSVQNRELTALVALKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
NVARSLRQSVDALLSKPSAEPASEYQEHQMRIAMLLEELKSSPSDGTDGYLQNFNVSHIIQSVVDVWEDELNKSGVQVHI
SGESDDYRVAVGQFNLDVIFNSVFASVLKRAYRGQMLDIVIREQNDFVEVSFIDFGQPFSTSTEAEDSAGVESTKVDTAI
EKLPALVEQSGGRLSLFSSAERNKIEILWPKAVESLINDEEPSIFVDSVEPSPVTEVLSEAVLSPEQLWLAKVEAMVAEH
YTNPEFGTAMAAKKLYVSERSLQRRFKSASSRTFTDYLTEVRLEKACESLLAGEKVVDVAFASGFNDPSYFSQRFKLYFG
VPPSKFASDALESE

Nucleotide


Download         Length: 3405 bp        

>NTDB_id=807871 RI132_RS04365 WP_130191213.1 916508..919912(+) (tfoS) [Vibrio vulnificus strain GCU-01]
TTGCTGCGTATTCTTGCCTGGCTTCTACTTGCTGGGCTTACACTACCGTTCAAAGTGCTAGCTTTGGACGGTAACTCTGC
CATATTTTACCCACTGCCTGGACAGGAGCAGGGAACCTTTGTTGCCGCTAAAAATCTCTTTGTTGGTGGTGATGGTGGTT
TGTGGATCCACGACGTGCACGGCAAAGTGCAATATTTCGATGGCAATACCTTGTTGCCGAAACGTGGCAGCCTTCTAGAG
TATCCTTCCGAGCAAGTGGCCTTTCATCAAGGCAGTTTTTGGACTTTTGTCGCGAATGAAGTCTTCCAAACATACCCCAA
TCAGAAGCGTCAGTTAGCGTTCAGCTTAAATCCGGGGGCAGAAATCAGAAAAATTGGCAGCTCAGATGGCCACATTTGGG
TGAGTGATGGCATCAATTTTTATGACTACGATATTGAATCAAAAGAATTAAAAACCTATTCCTTACTCTCGTTGTATCAA
AACAATCAGAGTAGCTACGTCTACATCAATGATGCAAAGCGGGTTTTAAGCAAATGGGTACTCGGTACCACATCGGGAGC
TTACCTATCACAAGGTGAGCAATTTACCCATATCAAAGCGTCAGCGAAGCATTTCGTTGCCAAACTGTACTTTTCTCCGA
CTCGTCGTGAGTTACTGGTGGGGACGCTAAATGGCGCTGCGCTCATTGATATTTTAAAGCCGACTCAAAAAAACATCATG
ATTGGAGAGTCTCATGTGCTTTCGATGACAGAAACCAATCAAGAATATTGGATTGGCACGGAACATGGTCTGTACAGTTA
CTCGTTTTTAACTGGACAAGTGGCCAAAGTGAAAGCGGCAGGTGCGCAAGATGTCTCTCCTGATAATCGAAAAATTTACT
CGTTGGTGAATGATGAACAAGGGGGTATTTGGGTTGCGACGAACAGTGGCATTCTCTACTACTCTCTATTTGGCCGAAAA
TTTGAACGTCTTAATAACATCACCGAAGAAAAAGCCAGCCGTTTTAATGGCAATATCACCAAAATTGTCTATGCATCAGA
TGAAACGATTTGGTTTAAAGATGCAAACAATCTTTACCGGGCCATTGGGGTTAATAAACAATATAGCCGTGTGCGTTTGC
CGATAAAGGTGAATGACTTTGCACTTGAAGATGGCAACATCTGGATTGCTTCCGAGCAAGGTCTGTATATATACGACACG
AATCAGTACAAACTTCGATCGTTCGATTTACCAAGTTACCTTAAAGGTAAAGAGATTGATTTTGTTTCGGTCAGCCCTCA
AGGCAAGGTTTGGATTAGTTCGGGTTATCGATTAGCTGCCATTGGCGTTGCCGATGGACGCTTCCAAGATTATGGCGATC
GGTGGATTGCCAGCCAAAATTTGCCCGCTCGAATTTTGGGTCTAGAAGTGGATCAAAAAGTCCCGTTAATCGTAAGAACC
GATCACGGGGCCTATGTGCTAGAAAACGACAAGATCCGTTTTGAGCGAAACACGCAGTCTTTTGGTGAAAGTGTCGATAT
TGCAGAAGCGAAAGATGGGTCGCTATGGTTTGCAGGGACTCACGGCATCTATCGTAAGGATCCCACAGAAAAAACGTTAG
GAGAGCTGGCACTTCCTCAGGAAAACGTGAAGCCTATTTGCTTAGTCACCGATGCTAGCGGCATTTGGATGGTGAGTTCA
ATTGGCCTCAGTTTTTACAATTTTGACGGAGAGCTGCGTAAGCACTTTGGGTCTCGCTCGGGCATTATGAGTAATGAGTT
CGTTGAAGGGGCATGTGCGGCTTCATTTGGAGAAGCGCAATCCGGCTCGGTGTTAGTACTGGGTTCAAAATATGGCCTGG
TATTTGCGGACCGTGATGACCTAATGGTATCCAAACTACCTGAACCTAGAGTGGTCATCAGCCAAGTTCGTATTGATGAT
CAGGTTGCAAATATCGGGCAAAAAGAGTGGCAATTGCCCGAGTTAGCGTATGGTTCCGCGATCAGTTTTGGCCTCGGCGT
GATGCCCAATGCTTACGGTGAAACGCTCTATTACCGTTTAAACCAGGAACACTGGCAAACCACAGAAGCAGGACAAGTCT
CTTTTGAACACCTTGCGGCAGGTGATTACTTGTTAAGTGTTAAAACCAGCCTAGTCGCAGGGGATTCCGTGCAAGTTCGC
TTTACGGTGTTACACCCGTGGTATCAAACTACGATGGCGATGGCAATTTTTGTCTTGCTTATCGTAGCGCTGGGCGGCTT
AGTTGTTTTCTGGCGTTCTCGTTACGTCAGTGTTCAAAACCGTGAGTTAACTGCACTGGTGGCATTGAAGACCAATCAAT
TGCGTCATCAGAGTCGAGTGTTGCTCACCAGTAACCAACAACTTCGTAAACAGATCCAAGTTAGAAATTTGCTGGTTGAC
AATGTTGCCCGTTCATTACGTCAAAGTGTGGATGCATTACTAAGCAAGCCATCGGCTGAACCTGCCTCAGAATATCAGGA
ACATCAAATGCGCATAGCAATGCTTTTGGAAGAGCTAAAAAGCTCGCCCAGCGATGGAACTGACGGGTATCTGCAAAACT
TTAACGTTAGCCATATCATTCAGTCGGTCGTTGACGTTTGGGAAGATGAACTCAATAAAAGCGGTGTTCAGGTGCACATT
TCTGGCGAATCGGACGACTATCGTGTCGCGGTAGGGCAATTTAATCTGGATGTCATTTTTAATAGTGTTTTTGCAAGTGT
GTTGAAACGCGCCTATCGTGGCCAAATGCTCGATATTGTGATCAGAGAGCAAAACGATTTTGTTGAAGTGTCGTTTATTG
ATTTTGGCCAGCCGTTTAGTACGAGTACGGAAGCCGAGGATAGCGCTGGTGTTGAGTCGACAAAAGTCGATACTGCAATC
GAGAAGCTTCCTGCTTTAGTTGAACAAAGTGGTGGACGCTTAAGCTTGTTCAGTAGCGCTGAGCGAAACAAGATCGAAAT
ACTGTGGCCGAAAGCGGTTGAATCTCTGATAAATGATGAAGAGCCAAGCATCTTTGTTGATTCAGTCGAACCGTCTCCAG
TTACGGAAGTCTTATCCGAAGCTGTTCTGTCGCCAGAGCAGCTATGGTTGGCGAAGGTCGAGGCTATGGTGGCAGAGCAT
TATACAAACCCAGAATTTGGCACGGCAATGGCGGCCAAAAAGCTCTATGTTTCTGAGCGCAGCTTACAGCGACGGTTTAA
ATCAGCGAGCTCTCGTACATTTACGGATTACCTCACGGAAGTACGTTTAGAAAAAGCATGCGAAAGTTTGTTGGCTGGTG
AAAAAGTGGTCGATGTGGCTTTCGCATCGGGATTTAATGATCCTTCTTACTTTAGTCAACGTTTTAAACTGTACTTTGGT
GTGCCCCCTTCAAAATTTGCCAGTGACGCTCTAGAGTCCGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1052-1126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.478

100

0.4