Detailed information NTG0080787

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HXS60_RS01425
• Genome accession: NZ_AP023042
• Coordinates: 275045..276304 (+)
• Length: 419 a.a.
• NCBI ID: WP_034375723.1
• Uniprot ID: A0A6J4CVY0
• Organism: Helicobacter suis strain NHP19-4004
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 270045..281304

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HXS60_RS09665 (NHP194004_02890)	-	272219..272428 (+)	210	WP_141556969.1	hypothetical protein	-
HXS60_RS01415 (NHP194004_02900)	-	272438..273529 (+)	1092	WP_176486635.1	VirB8/TrbF family protein	-
HXS60_RS01420 (NHP194004_02910)	-	273526..275055 (+)	1530	WP_006564108.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HXS60_RS01425 (NHP194004_02920)	comB10	275045..276304 (+)	1260	WP_034375723.1	DNA type IV secretion system protein ComB10	Machinery gene
HXS60_RS01430 (NHP194004_02930)	-	276324..278465 (+)	2142	WP_232087234.1	collagen-like protein	-
HXS60_RS01435 (NHP194004_02940)	-	278485..279456 (+)	972	WP_104683451.1	hypothetical protein	-
HXS60_RS01440 (NHP194004_02950)	-	279468..279743 (+)	276	WP_050782209.1	hypothetical protein	-
HXS60_RS01445 (NHP194004_02960)	-	279908..280990 (+)	1083	WP_073193814.1	RNA-guided endonuclease TnpB family protein	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46535.81 Da
• Isoelectric Point: 10.1397

>NTDB_id=80787 HXS60_RS01425 WP_034375723.1 275045..276304(+) (comB10) [Helicobacter suis strain NHP19-4004]
MDANTKKWLKRGGIVLGGALGLFVLAMVVDKNTGKSKEEILELEESTYPLSDYFFVNGKKKDQPQSLPQIETHQHNTKKD
YNTINKELEAQNKALEKALESAKQEAKKLPQVVVLKNTETPKSIGSVATPQPVAPIVPPRTRRLTKEQLELLNSRMSPFE
PLKDAPKAEIDYGVDSFENLKAQDKGTNENKLLRTITADKMIPAFLITPISSQIAGKVTAQVETDIFANMGRAVLIPKGS
KVIGYYNNNNKIGEYRLNIAWTRIITPQGINIMLTNARGVDVKGYNGLIGKVIARNFSKYGMPLLTSTLSNGLLIALTSA
LANRQNKAGVGNPFFGDYLLMQLTRNTGMSLNQIVGQILADKARINPIIIIREGSRVFISPNLDIFIPKPRHGEVLAQFF
KEKKPVVKSQEESYEENEF

Nucleotide

• Length: 1260 bp

>NTDB_id=80787 HXS60_RS01425 WP_034375723.1 275045..276304(+) (comB10) [Helicobacter suis strain NHP19-4004]
ATGGATGCTAACACCAAGAAATGGCTCAAAAGAGGAGGGATTGTGCTGGGGGGAGCTTTAGGTTTGTTTGTGCTGGCTAT
GGTGGTGGATAAGAACACAGGAAAGTCTAAAGAAGAAATCCTTGAGTTAGAGGAAAGCACCTATCCTTTGAGTGATTATT
TTTTTGTCAATGGCAAGAAAAAAGACCAGCCCCAGAGTTTGCCACAGATAGAAACACACCAGCACAACACCAAAAAAGAC
TACAACACCATCAACAAGGAGCTAGAAGCGCAAAACAAAGCCCTAGAGAAAGCCTTAGAGAGCGCCAAGCAAGAAGCTAA
GAAACTTCCACAAGTGGTGGTGCTTAAAAACACAGAGACACCCAAGTCTATTGGGAGTGTGGCAACACCCCAGCCTGTTG
CTCCTATTGTGCCCCCACGCACCAGAAGACTCACCAAAGAGCAATTAGAGCTCTTAAACTCTAGAATGAGCCCCTTTGAG
CCCCTCAAAGATGCGCCCAAAGCAGAGATTGACTATGGAGTAGATAGCTTTGAAAATCTCAAAGCCCAAGATAAAGGTAC
AAATGAGAATAAGCTCTTAAGAACGATCACCGCTGATAAGATGATTCCAGCCTTTCTGATCACGCCCATCTCTAGCCAAA
TTGCGGGCAAGGTTACTGCACAGGTGGAGACAGATATTTTTGCCAATATGGGCAGGGCTGTGCTCATCCCTAAGGGCTCA
AAGGTTATTGGCTATTACAATAACAACAATAAGATAGGTGAATACCGCCTCAACATTGCATGGACGCGCATTATCACACC
TCAAGGCATTAATATCATGCTCACCAATGCTAGAGGCGTAGATGTGAAGGGCTATAATGGGTTGATTGGTAAGGTCATTG
CCCGTAACTTCTCTAAATATGGCATGCCCTTACTCACCTCCACTCTCTCTAATGGCTTGCTCATCGCGCTCACCTCTGCT
CTAGCTAATAGACAGAATAAGGCAGGGGTGGGCAACCCTTTTTTTGGGGACTATCTCTTGATGCAACTGACCCGCAACAC
AGGGATGAGCCTCAATCAGATCGTAGGACAAATCCTAGCAGACAAAGCCCGTATCAATCCTATTATCATCATTAGAGAAG
GAAGCCGTGTTTTTATCTCCCCTAATTTAGACATCTTCATCCCTAAGCCTAGGCATGGGGAAGTCCTCGCACAATTTTTT
AAAGAGAAAAAGCCCGTTGTTAAATCACAGGAGGAAAGCTATGAGGAAAATGAGTTTTAG

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (195-385)

3D structure

• AlphaFold DB: A0A6J4CVY0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.563	97.136	0.52