Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P5655_RS21265 Genome accession   NZ_CP120681
Coordinates   3952539..3952988 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis strain DSM 10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3947539..3957988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5655_RS21230 (P5655_21230) yckA 3947690..3948370 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  P5655_RS21235 (P5655_21235) yckB 3948380..3949243 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  P5655_RS21240 (P5655_21240) - 3949405..3949602 (+) 198 WP_119122841.1 hypothetical protein -
  P5655_RS21245 (P5655_21245) yckC 3949621..3950076 (+) 456 WP_003246356.1 RDD family protein -
  P5655_RS21250 (P5655_21250) yckD 3950158..3950490 (+) 333 WP_003246247.1 YckD family protein -
  P5655_RS21255 (P5655_21255) bglC 3950644..3952077 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  P5655_RS21260 (P5655_21260) nin/comJ 3952114..3952512 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  P5655_RS21265 (P5655_21265) nucA/comI 3952539..3952988 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  P5655_RS21270 (P5655_21270) tlpC 3953156..3954877 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  P5655_RS21275 (P5655_21275) hxlB 3954988..3955545 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  P5655_RS21280 (P5655_21280) hxlA 3955551..3956183 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  P5655_RS21285 (P5655_21285) hxlR 3956416..3956778 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=807783 P5655_RS21265 WP_003246436.1 3952539..3952988(-) (nucA/comI) [Bacillus subtilis strain DSM 10]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=807783 P5655_RS21265 WP_003246436.1 3952539..3952988(-) (nucA/comI) [Bacillus subtilis strain DSM 10]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1