Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P5655_RS09315 Genome accession   NZ_CP120681
Coordinates   1705532..1706152 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1700532..1711152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5655_RS09275 (P5655_09275) ptsA 1701663..1702169 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  P5655_RS09280 (P5655_09280) ypqA 1702307..1702726 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  P5655_RS09285 (P5655_09285) sppG 1702747..1703124 (-) 378 WP_004398696.1 YppG family protein -
  P5655_RS09290 (P5655_09290) yppF 1703312..1703500 (+) 189 WP_003230690.1 YppF family protein -
  P5655_RS09295 (P5655_09295) yppE 1703539..1703910 (-) 372 WP_003246080.1 YppE family protein -
  P5655_RS09300 (P5655_09300) yppD 1703956..1704201 (-) 246 WP_004398488.1 YppD family protein -
  P5655_RS09305 (P5655_09305) sspM 1704400..1704504 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  P5655_RS09310 (P5655_09310) yppC 1704529..1705491 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  P5655_RS09315 (P5655_09315) recU 1705532..1706152 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  P5655_RS09320 (P5655_09320) ponA 1706174..1708918 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  P5655_RS09325 (P5655_09325) ypoC 1708994..1709488 (-) 495 WP_009967579.1 YpoC family protein -
  P5655_RS09330 (P5655_09330) nth 1709485..1710144 (-) 660 WP_009967580.1 endonuclease III -
  P5655_RS09335 (P5655_09335) dnaD 1710163..1710861 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=807732 P5655_RS09315 WP_004399067.1 1705532..1706152(+) (recU) [Bacillus subtilis strain DSM 10]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=807732 P5655_RS09315 WP_004399067.1 1705532..1706152(+) (recU) [Bacillus subtilis strain DSM 10]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1