Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P5655_RS05120 Genome accession   NZ_CP120681
Coordinates   882589..882867 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain DSM 10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 877589..887867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5655_RS05100 (P5655_05100) panEB 878776..879687 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  P5655_RS05105 (P5655_05105) ampS 879721..880953 (-) 1233 WP_003232341.1 aminopeptidase -
  P5655_RS05110 (P5655_05110) ykpC 881063..881197 (-) 135 WP_003238865.1 protein YkpC -
  P5655_RS05115 (P5655_05115) mreBH 881298..882305 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  P5655_RS05120 (P5655_05120) abrB 882589..882867 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  P5655_RS05125 (P5655_05125) kinC 883057..884343 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  P5655_RS05130 (P5655_05130) ykqA 884359..885192 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  P5655_RS05135 (P5655_05135) ktrC 885255..885920 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  P5655_RS05140 (P5655_05140) ade 886075..887808 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=807727 P5655_RS05120 WP_003244728.1 882589..882867(+) (abrB) [Bacillus subtilis strain DSM 10]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=807727 P5655_RS05120 WP_003244728.1 882589..882867(+) (abrB) [Bacillus subtilis strain DSM 10]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576