Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HXS57_RS02200 Genome accession   NZ_AP023039
Coordinates   432709..432993 (+) Length   94 a.a.
NCBI ID   WP_006563999.1    Uniprot ID   -
Organism   Helicobacter suis strain NHP19-4003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427709..437993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS57_RS02180 (NHP194003_04420) - 427815..429848 (+) 2034 WP_006564014.1 class I SAM-dependent DNA methyltransferase -
  HXS57_RS02185 (NHP194003_04430) - 430081..431259 (+) 1179 WP_176485817.1 restriction endonuclease subunit S -
  HXS57_RS02190 (NHP194003_04440) - 431341..432120 (+) 780 WP_104705821.1 integrase -
  HXS57_RS02195 (NHP194003_04450) - 432233..432712 (+) 480 WP_034375662.1 hypothetical protein -
  HXS57_RS02200 (NHP194003_04460) comB2 432709..432993 (+) 285 WP_006563999.1 TrbC/VirB2 family protein Machinery gene
  HXS57_RS02205 (NHP194003_04470) comB3 433004..433267 (+) 264 WP_006564000.1 hypothetical protein Machinery gene
  HXS57_RS02210 (NHP194003_04480) - 433278..433514 (+) 237 WP_034375660.1 hypothetical protein -
  HXS57_RS02215 (NHP194003_04490) - 433514..436087 (+) 2574 WP_176485818.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HXS57_RS02220 (NHP194003_04500) - 436199..437461 (-) 1263 WP_176485819.1 RNA-guided endonuclease InsQ/TnpB family protein -
  HXS57_RS02225 (NHP194003_04510) tnpA 437496..437912 (+) 417 WP_034376938.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10736.06 Da        Isoelectric Point: 11.1589

>NTDB_id=80770 HXS57_RS02200 WP_006563999.1 432709..432993(+) (comB2) [Helicobacter suis strain NHP19-4003]
MKKLRHFRKLIAFLGFSPPLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=80770 HXS57_RS02200 WP_006563999.1 432709..432993(+) (comB2) [Helicobacter suis strain NHP19-4003]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACCTTTATTACAAGCGGATATGACTAC
CTTTTTTAATAGCATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTCATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment