Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P3X63_RS18900 Genome accession   NZ_CP120679
Coordinates   3640246..3640542 (-) Length   98 a.a.
NCBI ID   WP_026588802.1    Uniprot ID   A0A6I7F8J1
Organism   Bacillus sp. HSf4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3635246..3645542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS18880 (P3X63_18880) smpB 3636067..3636540 (-) 474 WP_026588798.1 SsrA-binding protein -
  P3X63_RS18885 (P3X63_18885) rnr 3636660..3638966 (-) 2307 WP_026588799.1 ribonuclease R -
  P3X63_RS18890 (P3X63_18890) - 3638980..3639726 (-) 747 WP_026588800.1 carboxylesterase -
  P3X63_RS18895 (P3X63_18895) secG 3639866..3640096 (-) 231 WP_026588801.1 preprotein translocase subunit SecG -
  P3X63_RS18900 (P3X63_18900) abrB 3640246..3640542 (-) 297 WP_026588802.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P3X63_RS18905 (P3X63_18905) - 3640572..3640805 (-) 234 WP_142246090.1 helix-turn-helix transcriptional regulator -
  P3X63_RS18910 (P3X63_18910) - 3640957..3641358 (+) 402 WP_026588804.1 transcriptional regulator -
  P3X63_RS18915 (P3X63_18915) - 3641516..3641923 (+) 408 WP_179115687.1 transcriptional regulator -
  P3X63_RS18920 (P3X63_18920) - 3641968..3642645 (-) 678 WP_026588806.1 ABC transporter permease -
  P3X63_RS18925 (P3X63_18925) opuCC 3642665..3643582 (-) 918 WP_026588807.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  P3X63_RS18930 (P3X63_18930) - 3643596..3644249 (-) 654 WP_026588808.1 ABC transporter permease -
  P3X63_RS18935 (P3X63_18935) - 3644271..3645410 (-) 1140 WP_026588809.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11032.97 Da        Isoelectric Point: 8.8855

>NTDB_id=807690 P3X63_RS18900 WP_026588802.1 3640246..3640542(-) (abrB) [Bacillus sp. HSf4]
MKNTGIVRRIDELGRVVLPVEMRKVLNINEKDPLEIYSEGESIILTKYAANMACLMTGEITTQNKTYAGGKIVLSPRGAE
MLLQEMKEVLKQKHHAAY

Nucleotide


Download         Length: 297 bp        

>NTDB_id=807690 P3X63_RS18900 WP_026588802.1 3640246..3640542(-) (abrB) [Bacillus sp. HSf4]
ATGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTTGGAAGGGTGGTGCTCCCGGTGGAAATGCGGAAGGTGCTGAA
CATCAATGAAAAGGACCCGCTGGAAATATACAGTGAAGGTGAAAGCATCATTTTGACAAAATACGCCGCCAACATGGCCT
GCCTGATGACAGGGGAAATCACGACGCAGAACAAAACGTACGCGGGCGGCAAGATCGTGCTCAGTCCCCGCGGTGCAGAG
ATGCTTTTGCAAGAGATGAAGGAGGTCTTGAAACAGAAACACCATGCTGCATATTGA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7F8J1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

92.857

0.52