Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   P3X63_RS15345 Genome accession   NZ_CP120679
Coordinates   2965134..2965883 (-) Length   249 a.a.
NCBI ID   WP_277691346.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2960134..2970883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS15320 (P3X63_15320) mreC 2960404..2961312 (-) 909 WP_026588121.1 rod shape-determining protein MreC -
  P3X63_RS15325 (P3X63_15325) - 2961343..2962353 (-) 1011 WP_026588122.1 rod shape-determining protein -
  P3X63_RS15330 (P3X63_15330) radC 2962441..2963115 (-) 675 WP_026588123.1 DNA repair protein RadC -
  P3X63_RS15335 (P3X63_15335) - 2963170..2963742 (-) 573 WP_077736313.1 Maf family protein -
  P3X63_RS15340 (P3X63_15340) - 2963906..2964928 (-) 1023 WP_277691344.1 SPOR domain-containing protein -
  P3X63_RS15345 (P3X63_15345) comC 2965134..2965883 (-) 750 WP_277691346.1 A24 family peptidase Machinery gene
  P3X63_RS15350 (P3X63_15350) - 2965998..2967311 (-) 1314 WP_026588127.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  P3X63_RS15355 (P3X63_15355) - 2967390..2970032 (-) 2643 WP_026588128.1 valine--tRNA ligase -
  P3X63_RS15360 (P3X63_15360) - 2970492..2970683 (+) 192 WP_026588129.1 hypothetical protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26813.75 Da        Isoelectric Point: 9.4199

>NTDB_id=807680 P3X63_RS15345 WP_277691346.1 2965134..2965883(-) (comC) [Bacillus sp. HSf4]
MFLAYLFLSGLVLGSFFNATGRRIPGKISLIFPRSSCPVCRRKLTSLELIPVLSYLFLRGKCKGCKSPVSILYPAVELLT
ALLFVLAGLRFKSPGELLLMLALFSLLLIVLVSDIAYMVIPDAILCFFLPFFVIGRMLVPLEPWYSGLTGAAAGLLLPFI
VKLFAKDGIGGGDVKLFAVIGFVLGARLIFPVFFISAAAGTLLGFAGMIAGKVKGSEPIPFAPAILIGTVIVCFYGEPLI
DSYIELLHI

Nucleotide


Download         Length: 750 bp        

>NTDB_id=807680 P3X63_RS15345 WP_277691346.1 2965134..2965883(-) (comC) [Bacillus sp. HSf4]
ATGTTTTTGGCTTATCTTTTTTTATCAGGCTTAGTGCTCGGCTCTTTTTTTAATGCAACCGGCCGCCGCATCCCCGGCAA
AATATCGCTGATCTTCCCCCGCTCCTCATGTCCTGTCTGCCGCCGCAAACTGACCTCCCTTGAGCTTATTCCGGTTTTGT
CATACCTGTTTCTGCGCGGAAAATGCAAGGGCTGTAAAAGCCCTGTTTCCATCCTTTATCCCGCTGTTGAACTGTTGACT
GCATTGCTGTTTGTCTTGGCGGGGCTCCGTTTTAAAAGCCCGGGAGAGCTGCTGCTCATGCTCGCCCTTTTTTCCTTGCT
TTTGATCGTGTTGGTTTCAGATATCGCGTATATGGTGATTCCAGATGCCATCCTTTGTTTTTTTCTGCCTTTTTTCGTCA
TTGGCAGAATGCTGGTTCCGCTTGAGCCCTGGTATTCCGGCTTGACAGGAGCGGCCGCCGGTCTCCTGTTGCCGTTTATT
GTCAAGCTGTTCGCGAAGGATGGGATCGGCGGGGGAGATGTGAAATTGTTCGCCGTTATTGGCTTTGTCCTTGGCGCAAG
GCTGATTTTTCCCGTTTTTTTTATCTCCGCAGCGGCAGGAACATTGCTGGGCTTCGCCGGAATGATCGCCGGAAAGGTCA
AAGGAAGCGAGCCGATACCTTTTGCACCTGCCATTTTAATCGGAACAGTGATTGTCTGCTTCTATGGAGAACCGTTGATT
GATTCATATATTGAACTGTTGCACATATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(102-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50.41

97.992

0.494
  pilD Vibrio cholerae strain A1552

32.374

100

0.361