Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P3X63_RS13910 Genome accession   NZ_CP120679
Coordinates   2688014..2688784 (-) Length   256 a.a.
NCBI ID   WP_026587905.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2683014..2693784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS13890 (P3X63_13890) - 2683065..2683877 (-) 813 WP_026587901.1 pyruvate, water dikinase regulatory protein -
  P3X63_RS13895 (P3X63_13895) - 2683903..2684541 (-) 639 WP_026587902.1 helix-turn-helix transcriptional regulator -
  P3X63_RS13900 (P3X63_13900) glyS 2684742..2686781 (-) 2040 WP_026587903.1 glycine--tRNA ligase subunit beta -
  P3X63_RS13905 (P3X63_13905) glyQ 2686774..2687661 (-) 888 WP_026587904.1 glycine--tRNA ligase subunit alpha -
  P3X63_RS13910 (P3X63_13910) recO 2688014..2688784 (-) 771 WP_026587905.1 DNA repair protein RecO Machinery gene
  P3X63_RS13915 (P3X63_13915) - 2688822..2688965 (-) 144 WP_077736405.1 YqzL family protein -
  P3X63_RS13920 (P3X63_13920) era 2689122..2690027 (-) 906 WP_026587906.1 GTPase Era -
  P3X63_RS13925 (P3X63_13925) - 2690008..2690418 (-) 411 WP_026587907.1 cytidine deaminase -
  P3X63_RS13930 (P3X63_13930) - 2690552..2690932 (-) 381 WP_026587908.1 diacylglycerol kinase family protein -
  P3X63_RS13935 (P3X63_13935) ybeY 2690910..2691386 (-) 477 WP_026587909.1 rRNA maturation RNase YbeY -
  P3X63_RS13940 (P3X63_13940) - 2691383..2693467 (-) 2085 WP_142246141.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29374.05 Da        Isoelectric Point: 8.8014

>NTDB_id=807672 P3X63_RS13910 WP_026587905.1 2688014..2688784(-) (recO) [Bacillus sp. HSf4]
MLTKCEGIVIRTNDYGESNKIITLLTRENGKIGVLARGAKKPNSRLSAISQPFLYGSFLFRTSSGLGTLEQGEMIDSMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIITNLIEVKMLGVLGLYPELNECVHCKSKEG
TFHFSIRDNGFICHRCFAKDPYRVPLSPASVRLLRLFFYFDLSRLGNVSVKQETKEELKTVIQLYYDEYSGIYLKSRRFM
EQMDNMKKMLGKENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=807672 P3X63_RS13910 WP_026587905.1 2688014..2688784(-) (recO) [Bacillus sp. HSf4]
ATGCTGACGAAATGTGAAGGTATCGTCATTCGTACAAATGATTACGGAGAATCAAATAAAATCATTACACTGTTAACGAG
GGAAAATGGGAAAATCGGCGTGCTGGCCAGGGGGGCAAAAAAGCCGAACAGCCGCCTGTCCGCCATTTCCCAGCCGTTTC
TTTATGGCTCGTTTTTATTCAGAACGTCATCAGGTCTCGGCACATTGGAGCAGGGCGAAATGATCGATAGCATGCGGAAT
ATCCGGGAGGATCTTTTTTTAACGGCATATGCCGCATATATCGCAGAATTAATTGATAAGGGGACTGAGGAAAAGAAGCC
GAATCCGTTTTTATTCGAACTGCTTCTTCAGTCGATGAGAAGGCTGAATGACGGTACAGATCCCGACATCATCACCAATC
TCATCGAAGTCAAAATGCTCGGTGTGCTCGGCCTGTATCCGGAATTAAACGAATGTGTCCACTGCAAAAGTAAGGAAGGC
ACATTCCACTTTTCCATTCGGGACAACGGCTTCATTTGCCATCGCTGTTTTGCGAAAGATCCGTACAGGGTTCCGCTGTC
TCCTGCATCCGTAAGGCTCTTGAGGCTGTTTTTTTATTTTGACCTTTCAAGGCTTGGCAATGTATCGGTCAAACAGGAGA
CGAAAGAGGAGCTGAAAACAGTCATCCAGCTTTATTATGATGAGTACTCCGGGATTTATTTGAAATCACGGCGCTTCATG
GAGCAAATGGACAATATGAAAAAAATGCTGGGGAAAGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.953

100

0.77