Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P3X63_RS12195 Genome accession   NZ_CP120679
Coordinates   2378996..2379592 (+) Length   198 a.a.
NCBI ID   WP_026587579.1    Uniprot ID   A0A6I7FJ93
Organism   Bacillus sp. HSf4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2373996..2384592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS12155 (P3X63_12155) - 2375036..2375542 (-) 507 WP_277690864.1 PTS glucose transporter subunit IIA -
  P3X63_RS12160 (P3X63_12160) - 2375721..2376140 (+) 420 WP_026587572.1 Hsp20/alpha crystallin family protein -
  P3X63_RS12165 (P3X63_12165) - 2376159..2376575 (-) 417 WP_026587573.1 YppG family protein -
  P3X63_RS12170 (P3X63_12170) - 2376757..2376957 (+) 201 WP_026587574.1 YppF family protein -
  P3X63_RS12175 (P3X63_12175) - 2376987..2377361 (-) 375 WP_236251137.1 YppE family protein -
  P3X63_RS12180 (P3X63_12180) - 2377416..2377643 (-) 228 WP_277690867.1 YppD family protein -
  P3X63_RS12185 (P3X63_12185) sspM 2377848..2377952 (+) 105 WP_026587577.1 acid-soluble spore protein SspM -
  P3X63_RS12190 (P3X63_12190) - 2377985..2378917 (-) 933 WP_277692928.1 DUF2515 domain-containing protein -
  P3X63_RS12195 (P3X63_12195) recU 2378996..2379592 (+) 597 WP_026587579.1 Holliday junction resolvase RecU Machinery gene
  P3X63_RS12200 (P3X63_12200) - 2379651..2382305 (+) 2655 WP_277690869.1 PBP1A family penicillin-binding protein -
  P3X63_RS12205 (P3X63_12205) - 2382339..2382794 (-) 456 WP_236251269.1 YpoC family protein -
  P3X63_RS12210 (P3X63_12210) nth 2382830..2383492 (-) 663 WP_026587582.1 endonuclease III -
  P3X63_RS12215 (P3X63_12215) - 2383510..2384205 (-) 696 WP_026587583.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23138.33 Da        Isoelectric Point: 9.5165

>NTDB_id=807664 P3X63_RS12195 WP_026587579.1 2378996..2379592(+) (recU) [Bacillus sp. HSf4]
MIRYPNGKAYQPKNAASSLKKKPSYSNRGMTLEDDLNETNMYYLNHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGIYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWDRKQKNG
RKSIRKDELQEAAHPISLGYSPRIDYIKVIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=807664 P3X63_RS12195 WP_026587579.1 2378996..2379592(+) (recU) [Bacillus sp. HSf4]
GTGATTCGCTATCCGAACGGCAAAGCCTATCAGCCGAAAAATGCTGCCTCATCCTTAAAAAAGAAGCCGTCATACAGCAA
TCGCGGGATGACCCTCGAAGACGACCTGAATGAAACGAATATGTATTATCTCAATCATTCGATTGCGGTGATTCATAAAA
AACCGACACCTGTCCAAATTGTCCAGGTCGACTACCCGAAACGAAGCGCGGCAGTGATCAAAGAAGCCTACTTTAAACAG
TCGTCAACGACTGATTATAACGGGATTTATAAAGGGCGCTACATCGATTTTGAAGCGAAAGAAACAAAGAGCCGGACATC
GTTCCCCCTGCAAAATTTTCACGATCACCAGATCGAGCATATGAAGCAGGTGGTGGCCCAGGACGGTATTTGCTTTGTTA
TTATATCCGCATTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGACAGAAAGCAGAAAAACGGC
AGAAAATCGATTCGAAAAGATGAACTGCAGGAAGCTGCTCATCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAAGTTATTGACCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7FJ93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

84.08

100

0.854