Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P3X63_RS08365 Genome accession   NZ_CP120679
Coordinates   1633520..1633807 (+) Length   95 a.a.
NCBI ID   WP_026586804.1    Uniprot ID   A0A6I7FBT3
Organism   Bacillus sp. HSf4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628520..1638807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS08345 (P3X63_08345) - 1630155..1630529 (+) 375 WP_277692728.1 nuclear transport factor 2 family protein -
  P3X63_RS08350 (P3X63_08350) - 1630692..1631924 (-) 1233 WP_026586802.1 aminopeptidase -
  P3X63_RS08355 (P3X63_08355) - 1632014..1632142 (-) 129 WP_142246127.1 protein YkpC -
  P3X63_RS08360 (P3X63_08360) mreBH 1632216..1633223 (-) 1008 WP_026586803.1 rod-share determining protein MreBH -
  P3X63_RS08365 (P3X63_08365) abrB 1633520..1633807 (+) 288 WP_026586804.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P3X63_RS08370 (P3X63_08370) - 1633996..1635327 (+) 1332 WP_051290363.1 ATP-binding protein -
  P3X63_RS08375 (P3X63_08375) - 1635398..1636060 (+) 663 WP_026586805.1 TrkA family potassium uptake protein -
  P3X63_RS08380 (P3X63_08380) ade 1636181..1637899 (+) 1719 WP_277692729.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10666.44 Da        Isoelectric Point: 5.8808

>NTDB_id=807659 P3X63_RS08365 WP_026586804.1 1633520..1633807(+) (abrB) [Bacillus sp. HSf4]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIILQKYKPHGVCLITGEITSENRAYGNGNITLSPEGAE
LLLEEIKTKLNQEKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=807659 P3X63_RS08365 WP_026586804.1 1633520..1633807(+) (abrB) [Bacillus sp. HSf4]
TTGAAAGCAATAGGAGTTGTAAGAAAAGTGGACGAACTCGGCCGCATCGTGATGCCGATTGAATTGAGAAGGGCTCTTGA
TATCTCGATCAAGGACAGCATTGAATTCTTCGTCGATCAGGATAAAATCATCCTGCAAAAGTATAAACCGCACGGCGTCT
GCTTGATTACCGGTGAGATAACCTCTGAAAACCGCGCATACGGAAACGGGAACATTACGCTCAGCCCTGAGGGTGCTGAA
TTGCTGTTGGAGGAAATTAAAACCAAATTGAATCAGGAGAAAGCTTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7FBT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

53.191

98.947

0.526