Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   P3X63_RS08235 Genome accession   NZ_CP120679
Coordinates   1608182..1608772 (+) Length   196 a.a.
NCBI ID   WP_026586778.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603182..1613772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS08205 (P3X63_08205) - 1603486..1603938 (+) 453 WP_026586772.1 flavodoxin -
  P3X63_RS08210 (P3X63_08210) dapD 1604042..1604752 (+) 711 WP_026586773.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  P3X63_RS08215 (P3X63_08215) - 1604820..1605944 (+) 1125 WP_077736903.1 N-acetyldiaminopimelate deacetylase -
  P3X63_RS08220 (P3X63_08220) - 1606007..1606252 (+) 246 WP_026586775.1 YkuS family protein -
  P3X63_RS08225 (P3X63_08225) ahpA 1606544..1607086 (+) 543 WP_026586776.1 biofilm-specific peroxidase AhpA -
  P3X63_RS08230 (P3X63_08230) - 1607176..1607634 (+) 459 WP_026586777.1 redoxin domain-containing protein -
  P3X63_RS08235 (P3X63_08235) rok 1608182..1608772 (+) 591 WP_026586778.1 transcriptional regulator Rok Regulator
  P3X63_RS08240 (P3X63_08240) - 1608920..1609882 (-) 963 WP_026586779.1 hypothetical protein -
  P3X63_RS08245 (P3X63_08245) - 1610044..1610631 (+) 588 WP_077737234.1 molybdenum cofactor guanylyltransferase -
  P3X63_RS08250 (P3X63_08250) - 1610736..1611749 (+) 1014 WP_026586781.1 MoeB/ThiF family adenylyltransferase -
  P3X63_RS08255 (P3X63_08255) glp 1611768..1613060 (+) 1293 WP_277692723.1 gephyrin-like molybdotransferase Glp -
  P3X63_RS08260 (P3X63_08260) mobB 1613027..1613581 (+) 555 WP_026586783.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22636.58 Da        Isoelectric Point: 9.8634

>NTDB_id=807658 P3X63_RS08235 WP_026586778.1 1608182..1608772(+) (rok) [Bacillus sp. HSf4]
MFNEREALRLRLEQLNEAEIKVIREYQIERDNIYAKLRELDRPSSFNDTKKDFRTERKSESLPVLAELAAQEMKSYQQQQ
QPHTSQKNQQQTSPQASALPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMT
TFMQSLIKMYPEVKKPYRGQYILEGEISTETETEQQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=807658 P3X63_RS08235 WP_026586778.1 1608182..1608772(+) (rok) [Bacillus sp. HSf4]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGCTGAATGAGGCTGAGATTAAGGTCATTAGGGAGTATCA
AATCGAGCGTGATAATATTTATGCCAAGCTGCGCGAATTGGATCGCCCATCCAGCTTTAACGATACAAAAAAAGATTTTC
GAACAGAGCGAAAAAGCGAATCACTCCCGGTTTTAGCTGAATTGGCTGCACAAGAGATGAAAAGCTACCAGCAGCAACAG
CAGCCCCATACATCTCAAAAAAACCAGCAGCAGACTTCTCCGCAAGCCTCCGCACTGCCTGCCGGAATTCCAGACGGAAC
GACAAGGCGCAGAAGGGGAACAGCCCGTCCGGGGTCAAAGGCTGCAAAACTGCGTGAAGCGGCGATTAAAACATTAAAAC
GCCACAATGCGGCAATCAAAAGCTCCGAACTTCAAAAAGAAATTGAAAAAGAAAGCGGACTTGAGATCCCGAATATGACA
ACCTTCATGCAAAGCTTGATCAAGATGTACCCGGAAGTCAAAAAACCATACCGCGGACAATATATACTAGAGGGCGAAAT
CTCTACCGAGACTGAGACTGAACAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.069

96.429

0.801