Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   P3X63_RS08135 Genome accession   NZ_CP120679
Coordinates   1592782..1593243 (-) Length   153 a.a.
NCBI ID   WP_026586759.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587782..1598243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS08110 (P3X63_08110) - 1588141..1589310 (-) 1170 WP_026586755.1 aminotransferase A -
  P3X63_RS08115 (P3X63_08115) - 1589508..1589660 (-) 153 WP_201278494.1 hypothetical protein -
  P3X63_RS08120 (P3X63_08120) - 1589832..1590359 (+) 528 WP_277692720.1 RDD family protein -
  P3X63_RS08125 (P3X63_08125) - 1590435..1591754 (+) 1320 WP_277692721.1 MFS transporter -
  P3X63_RS08130 (P3X63_08130) - 1591829..1592743 (+) 915 WP_026586758.1 chemotaxis protein CheW -
  P3X63_RS08135 (P3X63_08135) kre 1592782..1593243 (-) 462 WP_026586759.1 YkyB family protein Regulator
  P3X63_RS08140 (P3X63_08140) - 1593384..1594685 (-) 1302 WP_026586760.1 MFS transporter -
  P3X63_RS08145 (P3X63_08145) - 1594772..1595269 (-) 498 WP_026586761.1 L,D-transpeptidase family protein -
  P3X63_RS08150 (P3X63_08150) - 1595457..1596314 (-) 858 WP_026586762.1 metallophosphoesterase -
  P3X63_RS08155 (P3X63_08155) fadH 1596462..1597226 (+) 765 WP_077736906.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17671.51 Da        Isoelectric Point: 10.6469

>NTDB_id=807657 P3X63_RS08135 WP_026586759.1 1592782..1593243(-) (kre) [Bacillus sp. HSf4]
MDDHNHTKDIKPTIENLSKAIYTVNRHAKTATNPKYLYLLKKKALQKLVNEGKGKKIGLHFSKNPRFSQQQSDVLISLGD
YFFHMPPTKEDFVNLPHLGTLNHTYRNPKAHMSLNIAKQLLQNYTGLKEKPLVTNKKRPSQKPVFKKLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=807657 P3X63_RS08135 WP_026586759.1 1592782..1593243(-) (kre) [Bacillus sp. HSf4]
ATGGACGACCATAATCATACGAAAGACATAAAACCAACGATCGAGAACCTGTCAAAAGCGATTTATACAGTGAATCGCCA
CGCGAAGACCGCGACTAATCCCAAATACCTGTATCTCCTGAAAAAGAAAGCTTTGCAAAAGCTCGTCAATGAAGGAAAGG
GTAAAAAGATAGGACTTCATTTTTCAAAAAATCCAAGATTCAGCCAGCAGCAGTCAGATGTGCTCATTTCTCTTGGAGAC
TACTTTTTTCACATGCCTCCAACTAAAGAAGACTTCGTCAACCTTCCGCACTTAGGTACATTAAATCATACGTATCGGAA
CCCTAAAGCTCATATGTCTTTGAATATAGCCAAGCAGCTTCTGCAAAACTACACGGGGCTGAAAGAAAAGCCGCTTGTCA
CAAACAAAAAGCGCCCTTCTCAAAAACCCGTATTCAAAAAGCTTGGTGAAAGCTATTTCTGA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

81.169

100

0.817