Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P3X63_RS06765 Genome accession   NZ_CP120679
Coordinates   1332399..1334225 (+) Length   608 a.a.
NCBI ID   WP_306292036.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1327399..1339225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS06750 (P3X63_06750) - 1328577..1329299 (-) 723 WP_026586414.1 response regulator -
  P3X63_RS06755 (P3X63_06755) - 1329296..1330918 (-) 1623 WP_026586415.1 sensor histidine kinase -
  P3X63_RS06760 (P3X63_06760) - 1331036..1332184 (+) 1149 WP_026586416.1 competence protein CoiA family protein -
  P3X63_RS06765 (P3X63_06765) pepF 1332399..1334225 (+) 1827 WP_306292036.1 oligoendopeptidase F Regulator
  P3X63_RS06770 (P3X63_06770) - 1334271..1334438 (-) 168 WP_026586418.1 hypothetical protein -
  P3X63_RS06775 (P3X63_06775) spxH 1334850..1335752 (-) 903 WP_077737037.1 protease adaptor protein SpxH -
  P3X63_RS06780 (P3X63_06780) - 1335749..1336147 (-) 399 WP_026586420.1 thiol management oxidoreductase -
  P3X63_RS06785 (P3X63_06785) - 1336436..1337068 (-) 633 WP_026586421.1 lytic transglycosylase domain-containing protein -
  P3X63_RS06790 (P3X63_06790) - 1337065..1337655 (-) 591 WP_026586422.1 CYTH domain-containing protein -
  P3X63_RS06795 (P3X63_06795) - 1337779..1338144 (+) 366 WP_026586423.1 hypothetical protein -
  P3X63_RS06800 (P3X63_06800) - 1338176..1338811 (+) 636 WP_026586424.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70340.09 Da        Isoelectric Point: 4.8801

>NTDB_id=807654 P3X63_RS06765 WP_306292036.1 1332399..1334225(+) (pepF) [Bacillus sp. HSf4]
MAEEKQAKKLPQRDEVKQEDTWRLEDIFPTDDAWNEEFQAVKELLPKLSEFKGKLGHSADDLYEALTFQDQVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKAGNLYTQAASATAYMVPEILSIQEEKLQQFLLEKEELKLYSHALEEINKERPHVLSEK
EEGLLAEVSDVLSSPSNTFGMLNNADMEFPEITDENGEKQQLTHGNYITFLESDNRDVRRAAFKAVYETYGRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSIPEEVYDNLVETINKHLPLLHRYVELRKKVLELDEVHMYDLYTPLVKDAGM
KVTYEQAKDYMLKGLAPLGEDYTSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILLNWHDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYLLNTLEDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHEIHVRAQ
EGEPLTPELLTSIYYDLNKKYFGDHIELDKEIGLEWSRIPHFYYNYYVYQYATGFSAAQALSQQILKEGKPAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTSSQPIEAACKTFEKQLDEMEELLLKLNP

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=807654 P3X63_RS06765 WP_306292036.1 1332399..1334225(+) (pepF) [Bacillus sp. HSf4]
GTGGCTGAAGAAAAACAAGCGAAGAAACTGCCTCAAAGAGATGAGGTAAAGCAAGAAGACACGTGGAGACTCGAGGACAT
CTTCCCGACCGATGACGCTTGGAATGAGGAATTTCAAGCGGTGAAAGAGCTGCTGCCTAAGCTCTCCGAATTCAAGGGCA
AGCTCGGCCATTCAGCCGATGATCTGTATGAAGCGCTGACGTTTCAGGATCAGGTGATGGAAAGGCTCGGCAAGCTGTAT
ACTTACGCACATATGCGCTATGATCAAGATACGGGAAATTCGTTTTATCAAGGCCTTAATGATAAAGCGGGCAACCTTTA
TACACAGGCGGCCAGCGCCACAGCCTATATGGTGCCGGAAATTCTGTCGATTCAAGAGGAAAAGCTGCAGCAGTTCCTTT
TAGAAAAAGAGGAATTAAAGCTTTATTCCCATGCGCTCGAAGAAATTAACAAAGAGCGCCCGCATGTGCTGAGTGAGAAG
GAAGAAGGGCTTTTGGCCGAGGTTTCAGATGTCCTCTCTTCACCGTCAAATACATTCGGAATGCTGAACAACGCCGATAT
GGAATTCCCGGAGATTACGGATGAAAACGGGGAAAAACAGCAGCTGACACACGGTAATTATATTACCTTTTTAGAGAGTG
ACAACCGTGATGTCCGACGCGCTGCCTTCAAGGCGGTGTACGAGACGTACGGACGCTTTAAAAACACGCTTGCTTCAACG
CTCAGCGGAGCGGTGAAAAAAGACAATTTTTATGCGAAAGTTAAACATTATAAATCGGCGAGGGAAGCGGCGCTGTCGCG
CAACAGCATCCCGGAGGAAGTCTATGATAACCTTGTCGAAACGATCAATAAACATCTGCCTCTCCTGCATCGATACGTCG
AGCTCAGAAAAAAAGTGCTTGAACTTGATGAGGTGCACATGTATGACCTGTATACTCCGCTTGTGAAAGATGCCGGTATG
AAGGTCACATATGAACAGGCAAAAGATTATATGCTGAAGGGTCTCGCACCTTTGGGAGAAGACTATACATCGATTCTGAA
AGAAGGCTTAAACAACCGCTGGGTCGATGTGTATGAAAATAAAGGGAAGCGAAGCGGCGCCTATTCTTCCGGAACATATG
GAACCAATCCGTATATTTTGCTGAACTGGCACGACAACGTCAACAACCTCTTTACACTCGTTCATGAATTCGGCCATTCA
GTGCACAGCTATTATACGAGAAAATATCAGCCGTATCCGTACGGCAACTACAGCATTTTCGTGGCTGAAGTGGCTTCAAC
GACAAATGAAGCCCTTTTGGGAGAATATTTGTTGAATACACTTGAGGATGAGAAGCAGCGGCTTTATATTTTAAACCACA
TGCTTGAAGGATTTAAAGGAACGGTGTTCAGACAGACGATGTTTGCCGAATTTGAGCATGAGATCCATGTCAGGGCCCAG
GAAGGGGAGCCGCTGACTCCTGAGCTGTTGACGAGCATCTATTATGATTTGAACAAAAAGTACTTTGGAGATCATATTGA
GCTCGACAAGGAAATCGGCCTTGAATGGTCAAGAATTCCGCATTTCTATTACAATTACTATGTATACCAATATGCGACAG
GCTTCAGTGCAGCCCAGGCTTTAAGCCAGCAAATATTAAAAGAGGGCAAACCAGCAGTTGACCGCTATATCGAATTTTTA
AAAGCGGGCAGCTCGGATTATCCGATTGAAGTGCTGAAAAAAGCGGGCGTTGATATGACGTCGTCACAACCGATTGAAGC
CGCATGCAAAACGTTTGAAAAACAGCTCGATGAAATGGAAGAGCTGCTGCTTAAGCTTAATCCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.759

97.533

0.495