Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P3X63_RS00270 Genome accession   NZ_CP120679
Coordinates   49851..50141 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 44851..55141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS00230 (P3X63_00230) - 44876..45205 (+) 330 WP_026589840.1 cyclic-di-AMP receptor -
  P3X63_RS00235 (P3X63_00235) - 45217..45657 (+) 441 WP_077735259.1 DUF327 family protein -
  P3X63_RS00240 (P3X63_00240) holB 45669..46658 (+) 990 WP_077735258.1 DNA polymerase III subunit delta' -
  P3X63_RS00245 (P3X63_00245) - 46661..47488 (+) 828 WP_026589837.1 stage 0 sporulation family protein -
  P3X63_RS00250 (P3X63_00250) yabA 47503..47865 (+) 363 WP_026589836.1 DNA replication initiation control protein YabA -
  P3X63_RS00255 (P3X63_00255) - 47922..48665 (+) 744 WP_026589835.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P3X63_RS00260 (P3X63_00260) - 48652..49002 (+) 351 WP_051290501.1 GIY-YIG nuclease family protein -
  P3X63_RS00265 (P3X63_00265) rsmI 48926..49801 (+) 876 WP_026589834.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P3X63_RS00270 (P3X63_00270) abrB 49851..50141 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P3X63_RS00275 (P3X63_00275) metG 50648..52636 (+) 1989 WP_077735256.1 methionine--tRNA ligase -
  P3X63_RS00280 (P3X63_00280) - 52730..53497 (+) 768 WP_026589832.1 TatD family hydrolase -
  P3X63_RS00285 (P3X63_00285) - 53614..54942 (+) 1329 WP_035428862.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=807636 P3X63_RS00270 WP_085959887.1 49851..50141(-) (abrB) [Bacillus sp. HSf4]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=807636 P3X63_RS00270 WP_085959887.1 49851..50141(-) (abrB) [Bacillus sp. HSf4]
ATGAATATGAAATCTACAGGTATCGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATTGAACTTCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTTGACGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCCGGCGGTAAATTGGTTCTTAGCCCAGAAGGC
GCTGAGCAAATCATCAACGAGATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938