Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   P3X63_RS00020 Genome accession   NZ_CP120679
Coordinates   3052..4164 (+) Length   370 a.a.
NCBI ID   WP_077735871.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS00005 (P3X63_00005) dnaA 1..1341 (+) 1341 WP_026589491.1 chromosomal replication initiator protein DnaA -
  P3X63_RS00010 (P3X63_00010) dnaN 1516..2652 (+) 1137 WP_026589492.1 DNA polymerase III subunit beta -
  P3X63_RS00015 (P3X63_00015) yaaA 2821..3036 (+) 216 WP_026589493.1 S4 domain-containing protein YaaA -
  P3X63_RS00020 (P3X63_00020) recF 3052..4164 (+) 1113 WP_077735871.1 DNA replication/repair protein RecF Machinery gene
  P3X63_RS00025 (P3X63_00025) - 4183..4425 (+) 243 WP_026589495.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  P3X63_RS00030 (P3X63_00030) gyrB 4484..6397 (+) 1914 WP_035428614.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  P3X63_RS00035 (P3X63_00035) gyrA 6600..9077 (+) 2478 WP_277692172.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42390.32 Da        Isoelectric Point: 6.8971

>NTDB_id=807634 P3X63_RS00020 WP_077735871.1 3052..4164(+) (recF) [Bacillus sp. HSf4]
MYIQNITLSSYRNYERLELQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVMKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLAEFAAKVVIKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQEAFSKLRDKEIDRGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAAIFRVENGTLLD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=807634 P3X63_RS00020 WP_077735871.1 3052..4164(+) (recF) [Bacillus sp. HSf4]
TTGTATATCCAAAATATTACATTATCATCTTACCGTAACTATGAGCGCCTTGAGCTCCAATTTGAAAACAAAGTGAACGT
GATTATTGGAGAAAACGCCCAGGGCAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCAAAATCCCATCGAA
CTTCAAATGACAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATGAAAAAAAACGGTTCT
GTTCCCATCCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGCAAGGTCAATCATATTGAGCAGCAAAAGCTGAGCCAGTA
CGTCGGGGCTGTTAACACGATTATGTTTGCACCGGAGGATTTGAACCTTGTAAAAGGAAGCCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCAGTCTATCTTCATGACCTTTCCCTTTACCAAAAAATCCTTTCACAGCGA
AATCATTTCTTGAAGCAGCTTCAAACGCGAAAACAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTGCGGA
ATTTGCAGCAAAGGTTGTGATCAAACGCCTTCAGTTTGTCGATCAGCTCGAAAAGTGGGCGCAGCCCATCCACTCCGGAA
TCTCAAGAGGGCTGGAGGAACTGACCTTGAAGTATCATACATCTCTTCACGTATCAGATTCGCCTGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAGCGTTTTCTAAATTGCGAGATAAAGAAATAGACCGGGGAGTATCCCTTTCAGGACCTCACAG
GGATGATGTTCTTTTTTATGTCAATGGACGGGATGTGCAGACTTACGGTTCACAGGGTCAGCAGCGGACGACCGCATTGT
CGCTCAAATTGGCGGAAATCGATTTGATTCAGGAAGAGATTGGGGAATACCCGATTCTGCTTTTGGATGATGTATTATCA
GAGCTGGATGACTACCGGCAGTCCCACCTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGACCATAAAACCTTAAATGAAGCAGCTATCTTTCGTGTAGAAAATGGCACGCTATTGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.16

99.73

0.889