Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RM370_RS15365 Genome accession   NZ_CP134716
Coordinates   3147744..3148373 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain RIVM_C040348     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3142744..3153373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RM370_RS15350 (RM370_15350) helD 3142986..3145040 (-) 2055 WP_001541157.1 DNA helicase IV -
  RM370_RS15355 (RM370_15355) yccF 3145163..3145609 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RM370_RS15360 (RM370_15360) yccS 3145619..3147781 (+) 2163 WP_000875067.1 YccS family putative transporter -
  RM370_RS15365 (RM370_15365) sxy/tfoX 3147744..3148373 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RM370_RS15370 (RM370_15370) sulA 3148592..3149101 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  RM370_RS15375 (RM370_15375) ompA 3149457..3150497 (+) 1041 WP_001313715.1 porin OmpA -
  RM370_RS15380 (RM370_15380) matP 3150573..3151025 (-) 453 WP_000877152.1 macrodomain Ter protein MatP -
  RM370_RS15385 (RM370_15385) ycbZ 3151211..3152971 (+) 1761 WP_000156496.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=807630 RM370_RS15365 WP_000839153.1 3147744..3148373(-) (sxy/tfoX) [Escherichia coli strain RIVM_C040348]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=807630 RM370_RS15365 WP_000839153.1 3147744..3148373(-) (sxy/tfoX) [Escherichia coli strain RIVM_C040348]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1