Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   P3F81_RS06560 Genome accession   NZ_CP120678
Coordinates   1369661..1370578 (-) Length   305 a.a.
NCBI ID   WP_147668818.1    Uniprot ID   A0A9Y2ET60
Organism   Selenobaculum gibii strain ICN-92133     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1364661..1375578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3F81_RS06520 (P3F81_06530) - 1365010..1365582 (-) 573 WP_147668802.1 RNA methyltransferase -
  P3F81_RS06525 (P3F81_06535) trmD 1365585..1366322 (-) 738 WP_147668804.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  P3F81_RS06530 (P3F81_06540) rimM 1366324..1366818 (-) 495 WP_147668806.1 ribosome maturation factor RimM -
  P3F81_RS06535 (P3F81_06545) - 1366821..1367219 (-) 399 WP_309320786.1 YlqD family protein -
  P3F81_RS06540 (P3F81_06550) - 1367312..1367539 (-) 228 WP_147668810.1 KH domain-containing protein -
  P3F81_RS06545 (P3F81_06555) rpsP 1367545..1367826 (-) 282 WP_147668812.1 30S ribosomal protein S16 -
  P3F81_RS06550 (P3F81_06560) ffh 1367857..1369203 (-) 1347 WP_147668814.1 signal recognition particle protein -
  P3F81_RS06555 (P3F81_06565) ylxM 1369205..1369564 (-) 360 WP_147668816.1 YlxM family DNA-binding protein -
  P3F81_RS06560 (P3F81_06570) pilA 1369661..1370578 (-) 918 WP_147668818.1 signal recognition particle-docking protein FtsY Machinery gene
  P3F81_RS06565 (P3F81_06575) smc 1370602..1374141 (-) 3540 WP_309320190.1 chromosome segregation protein SMC -
  P3F81_RS06570 (P3F81_06580) - 1374235..1374495 (-) 261 WP_147668822.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33347.61 Da        Isoelectric Point: 5.5433

>NTDB_id=807626 P3F81_RS06560 WP_147668818.1 1369661..1370578(-) (pilA) [Selenobaculum gibii strain ICN-92133]
MGFFDKLKKGLEKTRQSFTEKIEQIIVGYAKIDDEFLDELEEALIMADVGVKTTDYLMKEIRKGIKSKEIKNPEDLKPFI
QKQISEILGGTTVKEKITDDTPIVILVIGVNGVGKTTTIGKLGNYYKQEGKSVMFAAADTFRAAAIDQLEIWGNRVGVDV
IKHTEGADPAAVAFDAVQSAKARKVDVLIIDTAGRLHTKYNLMEELKKVTRVIQREIPKAPHETLLVLDATTGQNAINQA
QIFSKAAGISGLVLTKLDGTAKGGVVIGMKAELDIPVKWIGVGEGIDDLRPFDADSFAEALFIDK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=807626 P3F81_RS06560 WP_147668818.1 1369661..1370578(-) (pilA) [Selenobaculum gibii strain ICN-92133]
ATGGGTTTTTTTGATAAGTTAAAAAAAGGATTGGAAAAAACACGTCAAAGTTTTACCGAAAAAATTGAACAAATTATTGT
TGGATATGCAAAAATTGATGATGAATTTTTGGATGAATTGGAAGAGGCCTTAATTATGGCCGATGTGGGGGTAAAAACGA
CAGATTATTTAATGAAAGAGATTCGTAAAGGAATCAAGAGTAAAGAGATTAAAAATCCTGAGGATTTAAAACCATTTATT
CAAAAGCAAATTAGTGAAATATTAGGTGGAACTACTGTAAAAGAGAAAATTACAGATGATACACCAATCGTGATTTTGGT
CATTGGTGTGAACGGAGTTGGCAAAACCACGACGATTGGAAAATTGGGCAACTATTATAAGCAGGAAGGAAAAAGTGTTA
TGTTTGCAGCCGCTGACACTTTTAGAGCTGCTGCGATTGATCAGTTGGAAATTTGGGGAAATCGAGTTGGCGTTGATGTT
ATCAAACATACCGAAGGAGCTGATCCTGCTGCAGTTGCTTTTGATGCAGTTCAGTCTGCGAAAGCACGAAAAGTAGATGT
CTTAATTATTGATACAGCAGGGCGTTTACATACTAAATATAATTTAATGGAAGAATTGAAAAAGGTCACACGGGTAATTC
AGCGAGAAATTCCTAAGGCGCCCCATGAAACACTATTAGTTTTAGATGCAACAACAGGACAAAATGCAATTAATCAAGCA
CAAATTTTTTCAAAAGCTGCTGGAATTTCAGGTCTTGTATTAACTAAATTAGATGGAACAGCTAAAGGTGGAGTTGTCAT
TGGAATGAAAGCAGAATTGGATATTCCTGTAAAATGGATTGGTGTAGGAGAAGGAATTGACGACTTACGACCGTTTGACG
CTGACTCTTTTGCGGAAGCTTTATTTATCGACAAGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(18-82)

SRP54-type protein, GTPase domain (SRP54)

(103-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.355

99.672

0.482