Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   RM370_RS03975 Genome accession   NZ_CP134716
Coordinates   820619..821866 (-) Length   415 a.a.
NCBI ID   WP_001161838.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C040348     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 815619..826866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RM370_RS03960 (RM370_03960) galE 816125..817144 (+) 1020 WP_001024189.1 UDP-glucose 4-epimerase GalE -
  RM370_RS03965 (RM370_03965) - 817229..819511 (+) 2283 WP_001534463.1 hypothetical protein -
  RM370_RS03970 (RM370_03970) - 819508..820137 (+) 630 WP_000657788.1 CatB-related O-acetyltransferase -
  RM370_RS03975 (RM370_03975) kpsS 820619..821866 (-) 1248 WP_001161838.1 capsule biosynthesis protein Regulator
  RM370_RS03980 (RM370_03980) - 821901..823928 (-) 2028 WP_000579509.1 capsular polysaccharide biosynthesis protein -
  RM370_RS03985 (RM370_03985) kdsB 823925..824665 (-) 741 WP_000030760.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RM370_RS03990 (RM370_03990) - 824675..826351 (-) 1677 WP_001335609.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 49582.34 Da        Isoelectric Point: 10.1886

>NTDB_id=807601 RM370_RS03975 WP_001161838.1 820619..821866(-) (kpsS) [Escherichia coli strain RIVM_C040348]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNWVYYGDVKKGLRWII
RTDFSYIKNNKIQSP

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=807601 RM370_RS03975 WP_001161838.1 820619..821866(-) (kpsS) [Escherichia coli strain RIVM_C040348]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTAGCCTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGGGAACGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGACATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACACAGGTTAATTGGGTTTATTATGGAGATGTAAAGAAAGGGTTAAGATGGATTATA
AGGACAGATTTTTCTTACATCAAAAATAATAAGATACAATCACCGTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.642

94.217

0.373