Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HXS58_RS01075 Genome accession   NZ_AP023036
Coordinates   204051..204314 (-) Length   87 a.a.
NCBI ID   WP_034375715.1    Uniprot ID   -
Organism   Helicobacter suis strain NHP19-0020     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 199051..209314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS58_RS01055 (NHP190020_02220) - 199948..201039 (-) 1092 WP_176485135.1 type IV secretion system protein -
  HXS58_RS09660 (NHP190020_02230) - 201049..201258 (-) 210 WP_141556969.1 hypothetical protein -
  HXS58_RS01065 (NHP190020_02240) comB4 201263..203698 (-) 2436 WP_034375719.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HXS58_RS01070 (NHP190020_02250) - 203711..204031 (-) 321 WP_034375717.1 hypothetical protein -
  HXS58_RS01075 (NHP190020_02260) comB3 204051..204314 (-) 264 WP_034375715.1 hypothetical protein Machinery gene
  HXS58_RS01080 (NHP190020_02270) comB2 204325..204564 (-) 240 WP_050780158.1 TrbC/VirB2 family protein Machinery gene
  HXS58_RS01085 (NHP190020_02280) - 204597..205367 (-) 771 WP_034375711.1 hypothetical protein -
  HXS58_RS01090 (NHP190020_02290) - 205537..206403 (-) 867 WP_064430216.1 CfrBI family restriction endonuclease -
  HXS58_RS01095 (NHP190020_02300) - 206390..207565 (-) 1176 WP_064430215.1 DNA-methyltransferase -
  HXS58_RS01100 (NHP190020_02310) - 207704..209104 (+) 1401 WP_006564105.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9910.98 Da        Isoelectric Point: 8.9498

>NTDB_id=80743 HXS58_RS01075 WP_034375715.1 204051..204314(-) (comB3) [Helicobacter suis strain NHP19-0020]
MQVVQVSVPNLREISSKEKFLWLNAKSFLICLLVPFVLLPTIGVLYALLLYGVLLLVFSILEFFDEDISDILVARSKIKT
KSTKFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=80743 HXS58_RS01075 WP_034375715.1 204051..204314(-) (comB3) [Helicobacter suis strain NHP19-0020]
ATGCAAGTTGTGCAGGTGAGTGTGCCTAATCTAAGAGAAATCTCTAGCAAAGAAAAATTCTTATGGCTCAATGCCAAAAG
TTTTTTAATCTGCTTGCTTGTGCCCTTCGTGTTACTACCCACTATTGGAGTCTTATATGCCTTGCTGCTCTATGGTGTGC
TTTTATTAGTGTTTAGCATTTTAGAATTTTTTGATGAAGACATTAGCGATATTCTAGTTGCGCGCTCTAAAATCAAAACT
AAGAGCACAAAATTTTATGCGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

63.218

100

0.632

Multiple sequence alignment