Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P6S76_RS11480 Genome accession   NZ_CP120641
Coordinates   2437948..2438715 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain YL2021     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2432948..2443715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S76_RS11460 - 2433150..2433962 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  P6S76_RS11465 ccpN 2433988..2434626 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  P6S76_RS11470 glyS 2434727..2436766 (-) 2040 WP_007408288.1 glycine--tRNA ligase subunit beta -
  P6S76_RS11475 glyQ 2436759..2437646 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  P6S76_RS11480 recO 2437948..2438715 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  P6S76_RS11485 - 2438752..2438895 (-) 144 WP_007408286.1 YqzL family protein -
  P6S76_RS11490 era 2439050..2439955 (-) 906 WP_007408285.1 GTPase Era -
  P6S76_RS11495 - 2439936..2440346 (-) 411 WP_003152976.1 cytidine deaminase -
  P6S76_RS11500 - 2440470..2440844 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  P6S76_RS11505 ybeY 2440825..2441298 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  P6S76_RS11510 - 2441299..2443431 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=807418 P6S76_RS11480 WP_007408287.1 2437948..2438715(-) (recO) [Bacillus velezensis strain YL2021]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=807418 P6S76_RS11480 WP_007408287.1 2437948..2438715(-) (recO) [Bacillus velezensis strain YL2021]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGA
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89