Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   P6S76_RS11220 Genome accession   NZ_CP120641
Coordinates   2391992..2393029 (-) Length   345 a.a.
NCBI ID   WP_007408321.1    Uniprot ID   -
Organism   Bacillus velezensis strain YL2021     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2386992..2398029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S76_RS11170 - 2387226..2388011 (-) 786 WP_007408329.1 TasA family protein -
  P6S76_RS11175 - 2388076..2388660 (-) 585 WP_007408328.1 signal peptidase I -
  P6S76_RS11180 tapA 2388632..2389303 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  P6S76_RS11185 - 2389562..2389891 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  P6S76_RS11190 - 2389931..2390110 (-) 180 WP_003153093.1 YqzE family protein -
  P6S76_RS11195 comGG 2390167..2390544 (-) 378 WP_007408325.1 competence type IV pilus minor pilin ComGG Machinery gene
  P6S76_RS11200 comGF 2390545..2391045 (-) 501 WP_258566475.1 competence type IV pilus minor pilin ComGF -
  P6S76_RS11205 comGE 2390954..2391268 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  P6S76_RS11210 comGD 2391252..2391689 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  P6S76_RS11215 comGC 2391679..2391987 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  P6S76_RS11220 comGB 2391992..2393029 (-) 1038 WP_007408321.1 competence type IV pilus assembly protein ComGB Machinery gene
  P6S76_RS11225 comGA 2393016..2394086 (-) 1071 WP_007408320.1 competence type IV pilus ATPase ComGA Machinery gene
  P6S76_RS11230 - 2394278..2395228 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  P6S76_RS11235 - 2395374..2396675 (+) 1302 WP_007408318.1 hemolysin family protein -
  P6S76_RS11240 - 2396713..2397543 (-) 831 WP_007408317.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39670.94 Da        Isoelectric Point: 9.5987

>NTDB_id=807416 P6S76_RS11220 WP_007408321.1 2391992..2393029(-) (comGB) [Bacillus velezensis strain YL2021]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLQLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPVFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSRTTAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTSILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=807416 P6S76_RS11220 WP_007408321.1 2391992..2393029(-) (comGB) [Bacillus velezensis strain YL2021]
ATGAAGCGGATTAAACGAACCTGGCCCTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGCAACTACAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTCCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGGTGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCCGTACGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAAAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTATCTATCTATGACAGCTTAACAGCTTTTAAAGAGCAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCAGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

65.635

93.623

0.614