Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   RLE12_RS09860 Genome accession   NZ_CP134695
Coordinates   2116242..2116571 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain TJM4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2111242..2121571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLE12_RS09845 - 2111942..2112901 (+) 960 WP_004350973.1 SDR family oxidoreductase -
  RLE12_RS09850 - 2112898..2113923 (+) 1026 WP_004350972.1 glycosyltransferase family 4 protein -
  RLE12_RS09855 - 2114054..2116051 (+) 1998 WP_009313767.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  RLE12_RS09860 comEA/comE1 2116242..2116571 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  RLE12_RS09870 - 2116788..2117984 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  RLE12_RS09875 uvrB 2118172..2120184 (+) 2013 WP_004350967.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=807412 RLE12_RS09860 WP_003091430.1 2116242..2116571(+) (comEA/comE1) [Pseudomonas aeruginosa strain TJM4]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=807412 RLE12_RS09860 WP_003091430.1 2116242..2116571(+) (comEA/comE1) [Pseudomonas aeruginosa strain TJM4]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385