Detailed information NTG0080741

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HXS58_RS01045
• Genome accession: NZ_AP023036
• Coordinates: 197173..198432 (-)
• Length: 419 a.a.
• NCBI ID: WP_176486095.1
• Uniprot ID: -
• Organism: Helicobacter suis strain NHP19-0020
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 192173..203432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HXS58_RS01025 (NHP190020_02160)	-	192487..193569 (-)	1083	WP_073193814.1	RNA-guided endonuclease InsQ/TnpB family protein	-
HXS58_RS01030 (NHP190020_02170)	-	193734..194009 (-)	276	WP_050782209.1	hypothetical protein	-
HXS58_RS01035 (NHP190020_02180)	-	194021..194992 (-)	972	WP_104683451.1	hypothetical protein	-
HXS58_RS01040 (NHP190020_02190)	-	195012..197153 (-)	2142	WP_232087234.1	collagen-like protein	-
HXS58_RS01045 (NHP190020_02200)	comB10	197173..198432 (-)	1260	WP_176486095.1	DNA type IV secretion system protein ComB10	Machinery gene
HXS58_RS01050 (NHP190020_02210)	-	198422..199951 (-)	1530	WP_006564108.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HXS58_RS01055 (NHP190020_02220)	-	199948..201039 (-)	1092	WP_176485135.1	type IV secretion system protein	-
HXS58_RS09660 (NHP190020_02230)	-	201049..201258 (-)	210	WP_141556969.1	hypothetical protein	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46606.91 Da
• Isoelectric Point: 10.0886

>NTDB_id=80741 HXS58_RS01045 WP_176486095.1 197173..198432(-) (comB10) [Helicobacter suis strain NHP19-0020]
MDANTKKWLKRGGIVLGGVLGLFVLAIVVDKSTEKSKEEILELEESTYPLSDYFFVNGKKKDQLQSLPQIETHQHNTKKD
YNTINKELEAQNKALEKALESAKQEAKKLPQVVVLKNTETPKSIGSVATPQPVAPIVPPRTRRLTKEQLELLNSRMSPFE
PLKDAPKAEIDYGVDSFENLKAQDKGTNENKLLRTITADKMIPAFLITPISSQIAGKVTAQVETDIFANMGRAVLIPKGS
KVIGYYNNNNKIGEYRLNIAWTRIITPQGINIMLTNARGVDVKGYNGLIGKVIARNFSKYGMPLLTSTLSNGLLIALTSA
LANRQNKAGVGNPFFGDYLLMQLTRNTGMSLNQIVGQILADKARINPIIIIREGSRVFISPNLDIFIPKPRHGEVLAQFF
KEKKPVVKSQEESYEENEF

Nucleotide

• Length: 1260 bp

>NTDB_id=80741 HXS58_RS01045 WP_176486095.1 197173..198432(-) (comB10) [Helicobacter suis strain NHP19-0020]
ATGGATGCTAACACCAAGAAATGGCTCAAAAGAGGAGGGATTGTGCTGGGGGGAGTTTTAGGCTTGTTTGTGCTAGCCAT
AGTAGTGGATAAGAGCACAGAGAAGTCTAAAGAAGAAATCCTTGAGTTAGAGGAGAGCACCTATCCTTTGAGTGATTATT
TTTTTGTCAATGGCAAGAAAAAAGACCAGCTCCAGAGTTTGCCACAGATAGAAACACACCAGCACAACACCAAAAAAGAC
TACAACACCATCAACAAGGAGCTAGAAGCGCAAAACAAAGCCCTAGAGAAAGCCTTAGAGAGCGCCAAGCAAGAAGCTAA
GAAACTTCCACAAGTGGTGGTGCTTAAAAACACAGAGACACCCAAGTCTATTGGGAGTGTGGCAACACCCCAGCCTGTTG
CTCCTATTGTGCCCCCACGCACCAGAAGACTCACCAAAGAGCAATTAGAGCTCTTAAACTCTAGAATGAGCCCCTTTGAG
CCCCTCAAAGATGCGCCCAAAGCAGAGATTGACTATGGAGTAGATAGCTTTGAAAATCTCAAAGCCCAAGATAAAGGTAC
AAATGAGAATAAGCTCTTAAGAACGATCACCGCTGATAAGATGATTCCAGCCTTTCTGATCACGCCCATCTCTAGCCAAA
TTGCGGGCAAGGTTACTGCACAGGTGGAGACAGATATTTTTGCCAATATGGGCAGGGCTGTGCTCATCCCTAAGGGCTCA
AAGGTTATTGGCTATTACAATAACAACAATAAGATAGGTGAATACCGCCTCAACATTGCATGGACGCGCATTATCACACC
TCAAGGCATTAATATCATGCTCACCAATGCTAGAGGCGTAGATGTGAAGGGCTATAATGGGTTGATTGGTAAGGTCATTG
CCCGTAACTTCTCTAAATATGGCATGCCCTTACTCACCTCCACTCTCTCTAATGGCTTGCTCATCGCGCTCACCTCTGCT
CTAGCTAATAGACAGAATAAGGCAGGGGTGGGCAACCCTTTTTTTGGGGACTATCTCTTGATGCAACTGACCCGCAACAC
AGGGATGAGCCTCAATCAGATCGTAGGACAAATCCTAGCAGACAAAGCCCGTATCAATCCTATTATCATCATTAGAGAAG
GAAGCCGTGTTTTTATCTCCCCTAATTTAGACATCTTCATCCCTAAGCCTAGGCATGGGGAAGTCCTCGCACAATTTTTT
AAAGAGAAAAAGCCCGTTGTTAAATCACAGGAGGAAAGCTATGAGGAAAATGAGTTTTAG

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (195-385)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.563	97.136	0.52