Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P6S76_RS08645 Genome accession   NZ_CP120641
Coordinates   1813753..1814187 (+) Length   144 a.a.
NCBI ID   WP_007409853.1    Uniprot ID   -
Organism   Bacillus velezensis strain YL2021     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1815111..1816260 1813753..1814187 flank 924


Gene organization within MGE regions


Location: 1813753..1816260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S76_RS08645 nucA/comI 1813753..1814187 (+) 435 WP_007409853.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P6S76_RS08650 - 1814247..1815002 (+) 756 WP_003154084.1 YoaK family protein -
  P6S76_RS08655 - 1815111..1816260 (+) 1150 Protein_1652 IS3 family transposase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15558.45 Da        Isoelectric Point: 6.7105

>NTDB_id=807407 P6S76_RS08645 WP_007409853.1 1813753..1814187(+) (nucA/comI) [Bacillus velezensis strain YL2021]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGDGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=807407 P6S76_RS08645 WP_007409853.1 1813753..1814187(+) (nucA/comI) [Bacillus velezensis strain YL2021]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGACGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486