Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   RLE12_RS07490 Genome accession   NZ_CP134695
Coordinates   1613062..1614066 (+) Length   334 a.a.
NCBI ID   WP_003113871.1    Uniprot ID   A0A0H2ZEU1
Organism   Pseudomonas aeruginosa strain TJM4     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1608062..1619066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLE12_RS07460 fghA 1608154..1609005 (+) 852 WP_004351371.1 S-formylglutathione hydrolase -
  RLE12_RS07465 ispF 1609076..1609549 (+) 474 WP_003098560.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RLE12_RS07470 truD 1609546..1610613 (+) 1068 WP_004351368.1 tRNA pseudouridine(13) synthase TruD -
  RLE12_RS07475 surE 1610601..1611350 (+) 750 WP_003092341.1 5'/3'-nucleotidase SurE -
  RLE12_RS07480 - 1611383..1612018 (+) 636 WP_003098558.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  RLE12_RS07485 - 1612064..1612957 (+) 894 WP_003115226.1 peptidoglycan DD-metalloendopeptidase family protein -
  RLE12_RS07490 rpoS 1613062..1614066 (+) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  RLE12_RS07495 fdxA 1614493..1614816 (-) 324 WP_003119354.1 ferredoxin FdxA -
  RLE12_RS07500 mutS 1614883..1617450 (-) 2568 WP_003113873.1 DNA mismatch repair protein MutS -
  RLE12_RS07505 - 1617576..1618583 (-) 1008 WP_004351362.1 TolB family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=807407 RLE12_RS07490 WP_003113871.1 1613062..1614066(+) (rpoS) [Pseudomonas aeruginosa strain TJM4]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=807407 RLE12_RS07490 WP_003113871.1 1613062..1614066(+) (rpoS) [Pseudomonas aeruginosa strain TJM4]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653