Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   P6S76_RS05310 Genome accession   NZ_CP120641
Coordinates   1067298..1067876 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain YL2021     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062298..1072876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S76_RS05290 - 1062799..1064091 (-) 1293 WP_007409192.1 globin-coupled sensor protein -
  P6S76_RS05295 - 1064214..1065737 (-) 1524 WP_007409191.1 FAD-dependent oxidoreductase -
  P6S76_RS05300 - 1065862..1066719 (+) 858 WP_007409190.1 SDR family oxidoreductase -
  P6S76_RS05305 - 1066749..1066982 (-) 234 WP_007409189.1 IDEAL domain-containing protein -
  P6S76_RS05310 comK 1067298..1067876 (+) 579 WP_003155179.1 competence protein ComK Regulator
  P6S76_RS05315 - 1068022..1068390 (+) 369 WP_007409187.1 iron chaperone -
  P6S76_RS05320 - 1068417..1068788 (+) 372 WP_007409186.1 iron chaperone -
  P6S76_RS05325 - 1068835..1070046 (-) 1212 WP_007409185.1 GNAT family N-acetyltransferase -
  P6S76_RS05330 - 1070203..1070913 (-) 711 WP_007409183.1 YrpD family protein -
  P6S76_RS05335 - 1071109..1071378 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  P6S76_RS05340 - 1071411..1071728 (-) 318 WP_003155166.1 YbjQ family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=807389 P6S76_RS05310 WP_003155179.1 1067298..1067876(+) (comK) [Bacillus velezensis strain YL2021]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=807389 P6S76_RS05310 WP_003155179.1 1067298..1067876(+) (comK) [Bacillus velezensis strain YL2021]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823