Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P6S76_RS00250 Genome accession   NZ_CP120641
Coordinates   45647..45937 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain YL2021     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40647..50937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S76_RS00210 darA 40664..40993 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  P6S76_RS00215 - 41006..41446 (+) 441 WP_004264730.1 DUF327 family protein -
  P6S76_RS00220 holB 41458..42447 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  P6S76_RS00225 ricT 42450..43277 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  P6S76_RS00230 yabA 43292..43651 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  P6S76_RS00235 - 43712..44455 (+) 744 WP_007409920.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P6S76_RS00240 - 44442..44741 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  P6S76_RS00245 rsmI 44716..45597 (+) 882 WP_020953847.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P6S76_RS00250 abrB 45647..45937 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  P6S76_RS00255 metG 46421..48412 (+) 1992 WP_007409923.1 methionine--tRNA ligase -
  P6S76_RS00260 - 48488..49255 (+) 768 WP_007409924.1 TatD family hydrolase -
  P6S76_RS00265 - 49390..50715 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=807373 P6S76_RS00250 WP_169510469.1 45647..45937(-) (abrB) [Bacillus velezensis strain YL2021]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=807373 P6S76_RS00250 WP_169510469.1 45647..45937(-) (abrB) [Bacillus velezensis strain YL2021]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979