Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   P5623_RS15280 Genome accession   NZ_CP120625
Coordinates   2824775..2825887 (-) Length   370 a.a.
NCBI ID   WP_007497487.1    Uniprot ID   A0A9X0KBN2
Organism   Bacillus altitudinis strain DSM 103869     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2796370..2827406 2824775..2825887 within 0


Gene organization within MGE regions


Location: 2796370..2827406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS15155 (P5623_15155) dnaX 2796370..2798082 (-) 1713 WP_056703800.1 DNA polymerase III subunit gamma/tau -
  P5623_RS15165 (P5623_15165) tadA 2798755..2799231 (-) 477 WP_007496052.1 tRNA adenosine(34) deaminase TadA -
  P5623_RS15170 (P5623_15170) - 2799311..2799865 (+) 555 WP_025206593.1 isochorismatase family cysteine hydrolase -
  P5623_RS15175 (P5623_15175) - 2799911..2801212 (+) 1302 WP_056703797.1 glycoside hydrolase family 18 protein -
  P5623_RS15180 (P5623_15180) - 2801292..2801915 (+) 624 WP_056703794.1 deoxynucleoside kinase -
  P5623_RS15185 (P5623_15185) - 2801912..2802571 (+) 660 WP_056703791.1 deoxynucleoside kinase -
  P5623_RS15195 (P5623_15195) - 2803041..2803868 (-) 828 WP_008342025.1 methyl-accepting chemotaxis protein -
  P5623_RS15200 (P5623_15200) serS 2803970..2805244 (-) 1275 WP_008342028.1 serine--tRNA ligase -
  P5623_RS15205 (P5623_15205) pdxT 2805562..2806152 (-) 591 WP_008342030.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  P5623_RS15210 (P5623_15210) pdxS 2806173..2807057 (-) 885 WP_008342033.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  P5623_RS15215 (P5623_15215) - 2807304..2808782 (+) 1479 WP_277687468.1 PLP-dependent aminotransferase family protein -
  P5623_RS15220 (P5623_15220) - 2808891..2810246 (+) 1356 WP_024719428.1 IS1182 family transposase -
  P5623_RS15225 (P5623_15225) - 2810359..2811684 (-) 1326 WP_008342036.1 D-alanyl-D-alanine carboxypeptidase family protein -
  P5623_RS15230 (P5623_15230) guaB 2811845..2813311 (-) 1467 WP_008342039.1 IMP dehydrogenase -
  P5623_RS15235 (P5623_15235) - 2813433..2814401 (+) 969 WP_113767306.1 YaaC family protein -
  P5623_RS15265 (P5623_15265) gyrA 2819799..2822303 (-) 2505 WP_017359864.1 DNA gyrase subunit A -
  P5623_RS15270 (P5623_15270) gyrB 2822538..2824454 (-) 1917 WP_024718422.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  P5623_RS15275 (P5623_15275) - 2824512..2824757 (-) 246 WP_024718423.1 extracellular matrix regulator RemB -
  P5623_RS15280 (P5623_15280) recF 2824775..2825887 (-) 1113 WP_007497487.1 DNA replication/repair protein RecF Machinery gene
  P5623_RS15285 (P5623_15285) yaaA 2825904..2826119 (-) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  P5623_RS15290 (P5623_15290) dnaN 2826270..2827406 (-) 1137 WP_008347596.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42574.65 Da        Isoelectric Point: 7.1297

>NTDB_id=807218 P5623_RS15280 WP_007497487.1 2824775..2825887(-) (recF) [Bacillus altitudinis strain DSM 103869]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=807218 P5623_RS15280 WP_007497487.1 2824775..2825887(-) (recF) [Bacillus altitudinis strain DSM 103869]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGCTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTAAAGGGCAGCCCGCAAATCCGCCGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGGGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTGCTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83