Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P5623_RS15040 Genome accession   NZ_CP120625
Coordinates   2779897..2780187 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain DSM 103869     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2774897..2785187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS15025 (P5623_15025) - 2775081..2776283 (-) 1203 WP_007496219.1 G5 and 3D domain-containing protein -
  P5623_RS15030 (P5623_15030) - 2776528..2777295 (-) 768 WP_017359325.1 TatD family hydrolase -
  P5623_RS15035 (P5623_15035) metG 2777377..2779377 (-) 2001 WP_203143919.1 methionine--tRNA ligase -
  P5623_RS15040 (P5623_15040) abrB 2779897..2780187 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P5623_RS15045 (P5623_15045) rsmI 2780232..2781113 (-) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P5623_RS15050 (P5623_15050) - 2781088..2781387 (-) 300 WP_024719353.1 GIY-YIG nuclease family protein -
  P5623_RS15055 (P5623_15055) - 2781374..2782117 (-) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P5623_RS15060 (P5623_15060) yabA 2782173..2782526 (-) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  P5623_RS15065 (P5623_15065) - 2782540..2783367 (-) 828 WP_277687467.1 stage 0 sporulation family protein -
  P5623_RS15070 (P5623_15070) holB 2783370..2784359 (-) 990 WP_024719351.1 DNA polymerase III subunit delta' -
  P5623_RS15075 (P5623_15075) - 2784371..2784811 (-) 441 WP_008341898.1 YaaR family protein -
  P5623_RS15080 (P5623_15080) - 2784824..2785153 (-) 330 WP_012008640.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=807216 P5623_RS15040 WP_087975202.1 2779897..2780187(+) (abrB) [Bacillus altitudinis strain DSM 103869]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=807216 P5623_RS15040 WP_087975202.1 2779897..2780187(+) (abrB) [Bacillus altitudinis strain DSM 103869]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938