Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P5623_RS13340 Genome accession   NZ_CP120625
Coordinates   2458008..2458436 (+) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain DSM 103869     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2453008..2463436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS13330 (P5623_13330) - 2453597..2455582 (-) 1986 WP_268414104.1 hydantoinase B/oxoprolinase family protein -
  P5623_RS13335 (P5623_13335) - 2455572..2457641 (-) 2070 WP_268414105.1 hydantoinase/oxoprolinase family protein -
  P5623_RS13340 (P5623_13340) nucA/comI 2458008..2458436 (+) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P5623_RS13345 (P5623_13345) - 2458564..2460261 (+) 1698 WP_081114846.1 methyl-accepting chemotaxis protein -
  P5623_RS13350 (P5623_13350) comJ 2460398..2460784 (+) 387 WP_060832066.1 competence protein ComJ -
  P5623_RS13355 (P5623_13355) - 2460786..2461592 (-) 807 WP_156061337.1 AAC(3) family N-acetyltransferase -
  P5623_RS13360 (P5623_13360) - 2461617..2462036 (-) 420 WP_008347846.1 Lrp/AsnC family transcriptional regulator -
  P5623_RS13365 (P5623_13365) - 2462152..2462916 (+) 765 WP_046342598.1 MBL fold metallo-hydrolase -
  P5623_RS13370 (P5623_13370) - 2462963..2463292 (-) 330 WP_007498247.1 YckD family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=807213 P5623_RS13340 WP_007498233.1 2458008..2458436(+) (nucA/comI) [Bacillus altitudinis strain DSM 103869]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=807213 P5623_RS13340 WP_007498233.1 2458008..2458436(+) (nucA/comI) [Bacillus altitudinis strain DSM 103869]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514