Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   P5623_RS09655 Genome accession   NZ_CP120625
Coordinates   1728428..1729006 (-) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain DSM 103869     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1723428..1734006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS09635 (P5623_09635) - 1723525..1724694 (-) 1170 WP_048002568.1 MFS transporter -
  P5623_RS09640 (P5623_09640) - 1724838..1726277 (+) 1440 WP_056705124.1 PLP-dependent aminotransferase family protein -
  P5623_RS09645 (P5623_09645) - 1726308..1726790 (-) 483 WP_007499155.1 hypothetical protein -
  P5623_RS09650 (P5623_09650) - 1727178..1728284 (-) 1107 WP_056705189.1 D-TA family PLP-dependent enzyme -
  P5623_RS09655 (P5623_09655) comK 1728428..1729006 (-) 579 WP_017366958.1 competence protein ComK Regulator
  P5623_RS09660 (P5623_09660) - 1729297..1729533 (+) 237 WP_008348804.1 IDEAL domain-containing protein -
  P5623_RS09665 (P5623_09665) - 1729592..1730452 (-) 861 WP_008348806.1 SDR family oxidoreductase -
  P5623_RS09670 (P5623_09670) - 1730595..1732127 (+) 1533 WP_008348809.1 FAD-dependent oxidoreductase -
  P5623_RS09675 (P5623_09675) - 1732219..1733514 (+) 1296 WP_007497200.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=807207 P5623_RS09655 WP_017366958.1 1728428..1729006(-) (comK) [Bacillus altitudinis strain DSM 103869]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=807207 P5623_RS09655 WP_017366958.1 1728428..1729006(-) (comK) [Bacillus altitudinis strain DSM 103869]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAATTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615