Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P5623_RS07750 Genome accession   NZ_CP120625
Coordinates   1374906..1375184 (-) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus altitudinis strain DSM 103869     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1369906..1380184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS07735 (P5623_07735) - 1371895..1372563 (-) 669 WP_008345123.1 TrkA family potassium uptake protein -
  P5623_RS07740 (P5623_07740) - 1372601..1373443 (-) 843 WP_061418967.1 gamma-glutamylcyclotransferase family protein -
  P5623_RS07745 (P5623_07745) - 1373471..1374761 (-) 1291 Protein_1427 ATP-binding protein -
  P5623_RS07750 (P5623_07750) abrB 1374906..1375184 (-) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P5623_RS07755 (P5623_07755) mreBH 1375461..1376468 (+) 1008 WP_017359401.1 rod-share determining protein MreBH -
  P5623_RS07760 (P5623_07760) - 1376543..1376674 (+) 132 WP_003210922.1 protein YkpC -
  P5623_RS07765 (P5623_07765) - 1376781..1378013 (+) 1233 WP_008345134.1 aminopeptidase -
  P5623_RS07770 (P5623_07770) - 1378054..1379673 (-) 1620 WP_007498620.1 ATP-binding cassette domain-containing protein -
  P5623_RS07775 (P5623_07775) - 1379818..1380093 (+) 276 WP_008345136.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=807193 P5623_RS07750 WP_017359400.1 1374906..1375184(-) (abrB) [Bacillus altitudinis strain DSM 103869]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=807193 P5623_RS07750 WP_017359400.1 1374906..1375184(-) (abrB) [Bacillus altitudinis strain DSM 103869]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543