Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P5623_RS03230 Genome accession   NZ_CP120625
Coordinates   516155..516490 (-) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain DSM 103869     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 511155..521490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS03180 (P5623_03180) comGC 511353..511646 (+) 294 WP_057079311.1 competence type IV pilus major pilin ComGC Machinery gene
  P5623_RS03185 (P5623_03185) comGD 511639..512085 (+) 447 WP_277687665.1 competence type IV pilus minor pilin ComGD -
  P5623_RS03190 (P5623_03190) comGE 512069..512383 (+) 315 WP_058214150.1 competence type IV pilus minor pilin ComGE -
  P5623_RS03195 (P5623_03195) comGF 512325..512822 (+) 498 WP_268414587.1 competence type IV pilus minor pilin ComGF -
  P5623_RS03200 (P5623_03200) comGG 512819..513202 (+) 384 WP_024718845.1 competence type IV pilus minor pilin ComGG -
  P5623_RS03205 (P5623_03205) - 513263..513458 (+) 196 Protein_528 YqzE family protein -
  P5623_RS03210 (P5623_03210) - 513493..513807 (-) 315 WP_236781621.1 DUF3889 domain-containing protein -
  P5623_RS03215 (P5623_03215) tapA 514078..514605 (+) 528 WP_277687666.1 amyloid fiber anchoring/assembly protein TapA -
  P5623_RS03220 (P5623_03220) - 514656..515228 (+) 573 WP_017357979.1 signal peptidase I SipW -
  P5623_RS03225 (P5623_03225) - 515287..516087 (+) 801 WP_008342195.1 biofilm matrix protein TasA -
  P5623_RS03230 (P5623_03230) sinR 516155..516490 (-) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  P5623_RS03235 (P5623_03235) - 516524..516688 (-) 165 WP_008342197.1 anti-repressor SinI family protein -
  P5623_RS03240 (P5623_03240) - 516873..517669 (-) 797 Protein_535 YqhG family protein -
  P5623_RS03245 (P5623_03245) - 517684..519354 (-) 1671 WP_017367587.1 SNF2-related protein -
  P5623_RS03250 (P5623_03250) gcvT 519916..521013 (+) 1098 WP_073413953.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=807185 P5623_RS03230 WP_017357978.1 516155..516490(-) (sinR) [Bacillus altitudinis strain DSM 103869]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=807185 P5623_RS03230 WP_017357978.1 516155..516490(-) (sinR) [Bacillus altitudinis strain DSM 103869]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928