Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P5623_RS02895 Genome accession   NZ_CP120625
Coordinates   459523..460293 (+) Length   256 a.a.
NCBI ID   WP_159159777.1    Uniprot ID   -
Organism   Bacillus altitudinis strain DSM 103869     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 454523..465293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS02865 (P5623_02865) - 454853..456943 (+) 2091 WP_169476104.1 HD family phosphohydrolase -
  P5623_RS02870 (P5623_02870) ybeY 456944..457423 (+) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  P5623_RS02875 (P5623_02875) - 457401..457787 (+) 387 WP_024718818.1 diacylglycerol kinase family protein -
  P5623_RS02880 (P5623_02880) - 457900..458298 (+) 399 WP_008342410.1 cytidine deaminase -
  P5623_RS02885 (P5623_02885) era 458291..459196 (+) 906 WP_007501305.1 GTPase Era -
  P5623_RS02890 (P5623_02890) - 459344..459487 (+) 144 WP_008342408.1 YqzL family protein -
  P5623_RS02895 (P5623_02895) recO 459523..460293 (+) 771 WP_159159777.1 DNA repair protein RecO Machinery gene
  P5623_RS02900 (P5623_02900) glyQ 460623..461510 (+) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  P5623_RS02905 (P5623_02905) glyS 461503..463548 (+) 2046 WP_159159776.1 glycine--tRNA ligase subunit beta -
  P5623_RS02910 (P5623_02910) - 463715..464353 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  P5623_RS02915 (P5623_02915) - 464379..465200 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29375.13 Da        Isoelectric Point: 8.4348

>NTDB_id=807182 P5623_RS02895 WP_159159777.1 459523..460293(+) (recO) [Bacillus altitudinis strain DSM 103869]
MLIKSEGIVLRTTDYGETNKIVMLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=807182 P5623_RS02895 WP_159159777.1 459523..460293(+) (recO) [Bacillus altitudinis strain DSM 103869]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCATGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGGGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754